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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_5187 and PfGW456L13_1544 are separated by 145 nucleotides
PfGW456L13_1544 and PfGW456L13_1545 overlap by 14 nucleotides
PfGW456L13_1545 and PfGW456L13_1546 overlap by 8 nucleotides
PfGW456L13_1546 and PfGW456L13_1547 are separated by 205 nucleotides
PfGW456L13_5187 - 5S RNA, at 1,703,444 to 1,703,563
_5187
PfGW456L13_1544 - Paraquat-inducible protein A, at 1,703,709 to 1,704,368
_1544
PfGW456L13_1545 - Paraquat-inducible protein A, at 1,704,355 to 1,704,978
_1545
PfGW456L13_1546 - Paraquat-inducible protein B, at 1,704,971 to 1,707,274
_1546
PfGW456L13_1547 - Chromosome segregation ATPases, at 1,707,480 to 1,710,320
_1547
Group
Condition
PfGW456L13
_5187
PfGW456L13
_1544
PfGW456L13
_1545
PfGW456L13
_1546
PfGW456L13
_1547
carbon source
Trisodium citrate (C)
N.D.
-4.8
-5.0
-4.8
+0.1
carbon source
L-Malic (C)
N.D.
-2.9
-4.0
-4.4
+0.1
stress
Benzethonium chloride 0.0125 mM
N.D.
-3.3
-3.1
-3.0
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
-3.0
-3.1
-3.2
-0.0
carbon source
succinate (C)
N.D.
-2.3
-2.6
-3.3
+0.0
carbon source
D-Gluconic Acid (C)
N.D.
-2.2
-2.4
-3.5
+0.1
carbon source
a-Ketoglutaric (C)
N.D.
-2.6
-2.4
-2.8
+0.1
stress
Lomefloxacin 0.0004 mM
N.D.
-2.2
-2.3
-1.9
-0.5
carbon source
octanoate (C)
N.D.
-2.5
-2.3
-2.3
+0.6
carbon source
D-Gluconic Acid (C)
N.D.
-1.7
-1.7
-2.6
+0.1
carbon source
L-Lactate (C)
N.D.
-1.3
-1.7
-2.4
-0.2
stress
Bacitracin 1 mg/ml
N.D.
-1.8
-1.6
-1.6
+0.0
carbon source
D-Serine (C)
N.D.
-1.3
-1.1
-1.5
+0.2
carbon source
L-Arabinose (C)
N.D.
-1.2
-0.9
-1.5
-0.1
carbon source
D-Serine (C)
N.D.
-1.1
-1.2
-1.6
+0.2
carbon source
L-Arabinose (C)
N.D.
-1.2
-1.0
-1.0
+0.1
carbon source
D-Galactose (C)
N.D.
-0.9
-0.8
-0.7
-0.4
carbon source
D-Galactose (C)
N.D.
-0.5
-0.6
-1.2
-0.2
carbon source
D-Fructose (C)
N.D.
-0.6
-0.8
-0.8
-0.2
carbon source
Putrescine (C)
N.D.
-0.7
-0.8
-0.4
-0.3
carbon source
L-Glutamine (C)
N.D.
-0.8
-0.8
-0.4
-0.3
carbon source
D-Glucose (C)
N.D.
-0.3
-0.8
-1.0
-0.0
carbon source
L-Histidine (C)
N.D.
-0.5
-0.6
-0.7
-0.3
stress
Bacitracin 0.5 mg/ml
N.D.
-0.6
-0.9
-0.5
-0.0
stress
Fusidic 0.08 mg/ml
N.D.
-0.9
-0.5
-0.7
+0.1
carbon source
D-Lactate (C)
N.D.
-0.5
-0.5
-1.2
+0.0
stress
Chloride 400 mM
N.D.
-0.5
-1.0
-0.3
-0.2
nitrogen source
L-Arginine (N)
N.D.
-0.4
-0.7
-0.6
+0.1
carbon source
Glycerol (C)
N.D.
-0.6
-0.5
-0.7
+0.2
stress
Aluminum chloride 5 mM
N.D.
+0.4
+0.8
+0.8
-0.2
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