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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1540 and PfGW456L13_1541 are separated by 143 nucleotides
PfGW456L13_1541 and PfGW456L13_1542 are separated by 58 nucleotides
PfGW456L13_1542 and PfGW456L13_1543 overlap by 1 nucleotides
PfGW456L13_1543 and PfGW456L13_5183 are separated by 495 nucleotides
PfGW456L13_1540 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 1,694,153 to 1,695,169
_1540
PfGW456L13_1541 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 1,695,313 to 1,696,167
_1541
PfGW456L13_1542 - Putative sulfite oxidase subunit YedY, at 1,696,226 to 1,697,239
_1542
PfGW456L13_1543 - FIG001196: Membrane protein YedZ, at 1,697,239 to 1,697,859
_1543
PfGW456L13_5183 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 1,698,355 to 1,699,883
_5183
Group
Condition
PfGW456L13
_1540
PfGW456L13
_1541
PfGW456L13
_1542
PfGW456L13
_1543
PfGW456L13
_5183
nitrogen source
L-Proline (N)
-5.9
N.D.
-0.5
-0.3
N.D.
carbon source
D-Lactate (C)
-5.9
N.D.
-0.4
-0.4
N.D.
carbon source
L-Arabinose (C)
-6.0
N.D.
-0.5
+0.0
N.D.
carbon source
D-Mannose (C)
-5.9
N.D.
-0.3
-0.3
N.D.
carbon source
L-Asparagine (C)
-6.1
N.D.
-0.1
-0.1
N.D.
carbon source
L-Valine (C)
-5.9
N.D.
-0.1
-0.3
N.D.
carbon source
L-Valine (C)
-5.8
N.D.
-0.4
-0.0
N.D.
carbon source
L-Malic (C)
-5.6
N.D.
-0.4
-0.1
N.D.
carbon source
D-Fructose (C)
-5.7
N.D.
-0.3
-0.1
N.D.
carbon source
D-Lactate (C)
-5.9
N.D.
-0.2
-0.0
N.D.
carbon source
D,L-Lactate (C)
-5.5
N.D.
-0.2
-0.3
N.D.
nitrogen source
L-Valine (N)
-5.8
N.D.
-0.2
-0.1
N.D.
nitrogen source
NAG (N)
-5.9
N.D.
-0.1
-0.0
N.D.
carbon source
L-Histidine (C)
-6.0
N.D.
+0.1
-0.1
N.D.
carbon source
D-Galactose (C)
-5.9
N.D.
-0.0
-0.0
N.D.
carbon source
Tween 20 (C)
-6.0
N.D.
-0.0
+0.0
N.D.
carbon source
L-Tryptophan (C)
-5.8
N.D.
-0.0
-0.1
N.D.
carbon source
Trisodium citrate (C)
-6.1
N.D.
+0.2
-0.0
N.D.
carbon source
succinate (C)
-5.7
N.D.
-0.2
+0.0
N.D.
carbon source
L-Phenylalanine (C)
-5.8
N.D.
+0.0
-0.1
N.D.
nitrogen source
L-Phenylalanine (N)
-5.9
N.D.
+0.1
-0.1
N.D.
nitrogen source
Ammonium chloride (N)
-5.8
N.D.
+0.0
-0.1
N.D.
carbon source
L-Phenylalanine (C)
-5.7
N.D.
+0.0
-0.2
N.D.
carbon source
L-Alanine (C)
-5.8
N.D.
+0.1
-0.1
N.D.
carbon source
D-Serine (C)
-5.7
N.D.
-0.1
+0.0
N.D.
carbon source
a-Ketoglutaric (C)
-5.6
N.D.
-0.3
+0.1
N.D.
carbon source
L-Asparagine (C)
-5.8
N.D.
-0.1
+0.1
N.D.
carbon source
L-Tryptophan (C)
-5.8
N.D.
+0.3
-0.2
N.D.
carbon source
Glycerol (C)
-5.9
N.D.
+0.3
-0.1
N.D.
nitrogen source
L-Histidine (N)
-5.7
N.D.
+0.2
-0.0
N.D.
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