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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1496 and PfGW456L13_1497 are separated by 60 nucleotides
PfGW456L13_1497 and PfGW456L13_1498 are separated by 53 nucleotides
PfGW456L13_1498 and PfGW456L13_1499 overlap by 4 nucleotides
PfGW456L13_1499 and PfGW456L13_1500 are separated by 219 nucleotides
PfGW456L13_1496 - NADH dehydrogenase (EC 1.6.99.3), at 1,647,965 to 1,649,263
_1496
PfGW456L13_1497 - FIG00953980: hypothetical protein, at 1,649,324 to 1,649,497
_1497
PfGW456L13_1498 - FIG060329: MOSC domain protein, at 1,649,551 to 1,650,078
_1498
PfGW456L13_1499 - FIG00953333: hypothetical protein, at 1,650,075 to 1,650,701
_1499
PfGW456L13_1500 - benzoate MFS transporter BenK, at 1,650,921 to 1,652,264
_1500
Group
Condition
PfGW456L13
_1496
PfGW456L13
_1497
PfGW456L13
_1498
PfGW456L13
_1499
PfGW456L13
_1500
carbon source
L-Glutamine (C)
-0.4
+0.6
-3.5
-0.0
-0.2
carbon source
Glycerol (C)
-0.5
-0.4
-2.7
+0.1
+0.2
carbon source
octanoate (C)
-0.2
-0.1
-1.8
-0.1
-0.1
control
LB control
-0.2
+0.1
-2.0
-0.3
+0.1
carbon source
D,L-Lactate (C)
-0.2
+0.2
-2.3
+0.3
-0.0
nitrogen source
Gly-Glu (N)
-0.1
+0.0
-2.4
+0.4
+0.1
stress
sodium fluoride 12.5 mM
-0.2
-0.5
-1.5
+0.3
+0.0
nitrogen source
Cytosine (N)
-0.1
-0.1
-1.9
+0.1
+0.1
nitrogen source
L-Citrulline (N)
-0.2
-0.2
-1.3
+0.1
-0.0
nitrogen source
L-Lysine (N)
-0.2
+0.2
-1.9
+0.3
+0.1
nitrogen source
L-Isoleucine (N)
-0.0
-0.1
-1.9
+0.3
+0.2
stress
Vancomycin 0.125 mg/ml
+0.1
+0.1
-1.4
+0.1
-0.0
carbon source
Glycerol (C)
-0.1
+0.2
-1.3
-0.2
+0.1
stress
Lomefloxacin 0.0004 mM
-0.2
+0.3
-0.3
-0.8
-0.2
nitrogen source
L-Threonine (N)
-0.0
+0.1
-1.6
+0.2
+0.2
stress
Fusidic 0.08 mg/ml
-0.1
-0.4
-0.8
+0.4
-0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-0.2
-0.6
+0.6
+0.1
carbon source
D-Glucose (C)
-0.4
-0.9
+1.1
-0.3
+0.3
carbon source
L-Malic (C)
-0.2
-0.3
+0.9
-0.3
+0.2
carbon source
D-Fructose (C)
+0.1
-1.1
+1.1
-0.0
+0.1
carbon source
L-Malic (C)
+0.1
-0.4
+0.7
-0.2
+0.2
carbon source
a-Ketoglutaric (C)
-0.2
+0.8
+0.8
-0.5
-0.2
carbon source
Putrescine (C)
-0.4
+0.1
+1.1
-0.1
+0.0
carbon source
L-Lactate (C)
-0.3
-0.1
+1.4
+0.0
-0.1
carbon source
D-Gluconic Acid (C)
-0.4
+0.3
+1.3
-0.3
-0.1
nitrogen source
D-Serine (N)
-0.6
+0.3
+0.6
+0.3
+0.3
carbon source
Trisodium citrate (C)
-0.2
-0.1
+1.3
-0.1
+0.1
carbon source
L-Arabinose (C)
-0.1
-0.5
+1.7
-0.0
+0.1
carbon source
succinate (C)
+0.2
-0.5
+1.5
-0.1
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.1
+1.3
-0.3
+0.1
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