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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1485 and PfGW456L13_1486 are separated by 34 nucleotides
PfGW456L13_1486 and PfGW456L13_1487 are separated by 14 nucleotides
PfGW456L13_1487 and PfGW456L13_1488 are separated by 56 nucleotides
PfGW456L13_1488 and PfGW456L13_1489 are separated by 128 nucleotides
PfGW456L13_1485 - Type IV fimbrial biogenesis protein PilX, at 1,636,758 to 1,637,222
_1485
PfGW456L13_1486 - hypothetical protein, at 1,637,257 to 1,637,622
_1486
PfGW456L13_1487 - Type IV pilus biogenesis protein PilE, at 1,637,637 to 1,638,038
_1487
PfGW456L13_1488 - Glycine oxidase ThiO (EC 1.4.3.19), at 1,638,095 to 1,639,195
_1488
PfGW456L13_1489 - Type IV fimbriae expression regulatory protein PilR, at 1,639,324 to 1,640,661
_1489
Group
Condition
PfGW456L13
_1485
PfGW456L13
_1486
PfGW456L13
_1487
PfGW456L13
_1488
PfGW456L13
_1489
carbon source
L-Lactate (C)
-0.5
-0.8
-0.4
+0.1
-0.1
carbon source
D-Glucose (C)
-0.0
-1.5
-0.3
+0.1
+0.2
nitrogen source
L-Serine (N)
-0.1
-0.5
+0.1
-0.3
-0.1
carbon source
L-Glutamine (C)
-0.1
-0.7
+0.1
-0.1
+0.0
carbon source
L-Valine (C)
-0.4
-0.3
-0.1
-0.0
+0.0
nitrogen source
L-Proline (N)
+0.0
-0.3
-0.2
-0.2
+0.0
carbon source
Putrescine (C)
+0.3
-0.8
-0.2
+0.1
-0.0
carbon source
Trisodium citrate (C)
-0.3
-0.1
+0.2
-0.1
-0.2
carbon source
L-Arabinose (C)
-0.1
-0.6
+0.1
-0.1
+0.2
nitrogen source
Ammonium chloride (N)
-0.1
-0.6
+0.1
+0.0
-0.0
carbon source
D-Galactose (C)
-0.4
-0.3
+0.1
-0.0
+0.1
carbon source
D-Lactate (C)
-0.2
-0.3
-0.0
+0.3
-0.3
carbon source
D-Serine (C)
-0.0
-0.7
+0.2
-0.1
+0.0
stress
Chloride 400 mM
-0.1
-0.3
-0.1
+0.1
+0.1
carbon source
D,L-Lactate (C)
-0.1
-0.4
+0.3
+0.0
+0.1
carbon source
D-Fructose (C)
+0.0
+0.3
-0.0
-0.3
-0.1
stress
Vancomycin 0.125 mg/ml
+0.2
-0.4
+0.1
+0.1
-0.1
carbon source
L-Alanine (C)
-0.2
-0.2
+0.0
+0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.1
+0.2
-0.2
+0.1
nitrogen source
L-Threonine (N)
-0.2
-0.5
+0.7
+0.0
-0.1
carbon source
octanoate (C)
-0.0
-0.7
+1.1
+0.0
-0.3
carbon source
D-Gluconic Acid (C)
+0.4
-0.8
+0.2
+0.1
+0.2
nitrogen source
Gly-Glu (N)
-0.2
+0.3
+0.3
-0.2
-0.1
stress
Nickel (II) chloride 1 mM
+0.2
+0.4
-0.1
+0.1
+0.0
lb
LB
-0.1
+0.6
+0.1
+0.1
-0.0
carbon source
Glycerol (C)
-0.1
+0.5
+0.2
+0.0
+0.1
stress
Vancomycin 0.5 mg/ml
+0.4
+0.1
+0.3
-0.0
-0.0
stress
Vancomycin 0.25 mg/ml
+0.2
+0.2
+0.3
+0.1
-0.1
stress
Bacitracin 1 mg/ml
+0.3
+0.3
+0.2
+0.1
+0.0
carbon source
a-Ketoglutaric (C)
+0.2
+0.4
+0.3
+0.6
-0.1
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