Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_1480 and PfGW456L13_1481 overlap by 32 nucleotidesPfGW456L13_1481 and PfGW456L13_1482 are separated by 130 nucleotidesPfGW456L13_1482 and PfGW456L13_1483 are separated by 29 nucleotidesPfGW456L13_1483 and PfGW456L13_1484 overlap by 4 nucleotides PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470 _1480 PfGW456L13_1481 - Type IV fimbrial biogenesis protein FimT, at 1,634,439 to 1,634,978 _1481 PfGW456L13_1482 - type 4 fimbrial biogenesis protein FimU, at 1,635,109 to 1,635,582 _1482 PfGW456L13_1483 - Type IV fimbrial biogenesis protein PilV, at 1,635,612 to 1,636,028 _1483 PfGW456L13_1484 - Type IV fimbrial biogenesis protein PilW, at 1,636,025 to 1,636,732 _1484
Group Condition PfGW456L13_1480 PfGW456L13_1481 PfGW456L13_1482 PfGW456L13_1483 PfGW456L13_1484
carbon source octanoate (C) N.D. +0.3 -0.4 -0.4 -0.6
carbon source D-Glucose (C) N.D. -0.4 -0.3 +0.4 -0.2
nitrogen source L-Lysine (N) N.D. -0.1 -0.4 +0.2 +0.0
carbon source L-Lactate (C) N.D. -0.2 -0.3 +0.4 -0.3
nitrogen source L-Citrulline (N) N.D. -0.2 -0.2 +0.3 -0.2
carbon source Glycerol (C) N.D. -0.2 -0.5 +0.2 +0.3
carbon source L-Histidine (C) N.D. +0.3 -0.5 +0.1 -0.0
carbon source D-Lactate (C) N.D. +0.1 -0.5 +0.4 -0.1
stress Cisplatin 0.0125 mg/ml N.D. -0.4 +0.3 -0.1 -0.0
carbon source D-Galactose (C) N.D. +0.4 -0.3 +0.4 -0.4
carbon source L-Arabinose (C) N.D. -0.4 -0.0 +0.2 +0.2
carbon source D,L-Lactate (C) N.D. -0.1 +0.5 -0.1 -0.2
carbon source D-Gluconic Acid (C) N.D. -0.6 +0.6 -0.1 +0.2
carbon source L-Valine (C) N.D. -0.3 +0.5 -0.1 +0.1
stress Fusidic 0.08 mg/ml N.D. -0.3 +0.2 +0.3 +0.1
nitrogen source Uridine (N) N.D. +0.1 -0.3 +0.2 +0.3
carbon source succinate (C) N.D. +0.3 +0.4 -0.1 -0.3
nitrogen source L-Proline (N) N.D. +0.2 +0.2 -0.2 +0.1
nitrogen source L-Phenylalanine (N) N.D. +0.4 -0.2 +0.1 +0.1
carbon source a-Ketoglutaric (C) N.D. +0.3 +0.3 -0.3 +0.3
nitrogen source D-Alanine (N) N.D. -0.2 +0.3 +0.2 +0.2
carbon source Trisodium citrate (C) N.D. +0.3 -0.3 +0.2 +0.2
nitrogen source L-Aspartic Acid (N) N.D. +0.2 -0.1 +0.2 +0.3
control LB control N.D. +0.4 +0.1 +0.2 +0.1
stress Vancomycin 0.5 mg/ml N.D. +0.2 +0.3 +0.2 +0.1
stress Aluminum chloride 5 mM N.D. +0.2 +0.2 +0.4 +0.0
carbon source a-Ketoglutaric (C) N.D. -0.2 +0.4 +0.4 +0.2
carbon source D-Fructose (C) N.D. +0.3 +0.3 -0.1 +0.4
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x N.D. +0.6 +0.4 +0.1 -0.2
nitrogen source D-Serine (N) N.D. +0.4 +0.3 +0.2 +0.3
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