Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_1478 and PfGW456L13_1479 overlap by 8 nucleotidesPfGW456L13_1479 and PfGW456L13_1480 are separated by 168 nucleotidesPfGW456L13_1480 and PfGW456L13_1481 overlap by 32 nucleotidesPfGW456L13_1481 and PfGW456L13_1482 are separated by 130 nucleotides PfGW456L13_1478 - Lipoprotein signal peptidase (EC 3.4.23.36), at 1,632,442 to 1,632,909 _1478 PfGW456L13_1479 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 1,632,902 to 1,633,354 _1479 PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470 _1480 PfGW456L13_1481 - Type IV fimbrial biogenesis protein FimT, at 1,634,439 to 1,634,978 _1481 PfGW456L13_1482 - type 4 fimbrial biogenesis protein FimU, at 1,635,109 to 1,635,582 _1482
Group Condition PfGW456L13_1478 PfGW456L13_1479 PfGW456L13_1480 PfGW456L13_1481 PfGW456L13_1482
carbon source D-Lactate (C) N.D. -4.5 N.D. +0.1 -0.5
carbon source D-Gluconic Acid (C) N.D. -4.5 N.D. -0.2 -0.0
carbon source Trisodium citrate (C) N.D. -4.6 N.D. +0.3 -0.3
carbon source L-Glutamine (C) N.D. -4.0 N.D. -0.0 -0.3
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x N.D. -3.7 N.D. +0.2 -0.1
carbon source succinate (C) N.D. -4.0 N.D. +0.3 +0.4
carbon source D-Gluconic Acid (C) N.D. -3.2 N.D. -0.6 +0.6
carbon source D-Galactose (C) N.D. -2.8 N.D. +0.4 -0.3
nitrogen source L-Alanine (N) N.D. -2.9 N.D. +0.1 +0.1
nitrogen source D-Alanine (N) N.D. -2.8 N.D. -0.2 +0.3
carbon source L-Lactate (C) N.D. -1.9 N.D. -0.2 -0.3
nitrogen source Uridine (N) N.D. -2.2 N.D. +0.1 -0.3
carbon source L-Tryptophan (C) N.D. -2.8 N.D. +0.2 +0.4
stress Cobalt chloride 0.16 mM N.D. -2.0 N.D. +0.0 -0.2
nitrogen source L-Glutamine (N) N.D. -1.8 N.D. -0.3 -0.1
stress Nickel (II) chloride 1 mM N.D. -2.0 N.D. -0.0 -0.0
nitrogen source Ammonium chloride (N) N.D. -2.1 N.D. -0.0 +0.1
nitrogen source L-Asparagine (N) N.D. -1.8 N.D. -0.1 +0.0
nitrogen source L-Aspartic Acid (N) N.D. -2.0 N.D. +0.2 -0.1
carbon source Tween 20 (C) N.D. -1.9 N.D. +0.1 -0.1
carbon source L-Malic (C) N.D. -2.2 N.D. +0.3 +0.1
carbon source L-Valine (C) N.D. -1.8 N.D. +0.2 -0.2
carbon source D,L-Lactate (C) N.D. -2.0 N.D. -0.1 +0.5
stress Cephalothin 3 mg/ml N.D. -1.7 N.D. -0.1 +0.2
stress Vancomycin 0.5 mg/ml N.D. -1.8 N.D. +0.2 +0.3
carbon source D-Fructose (C) N.D. -1.7 N.D. +0.3 +0.3
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x N.D. -0.8 N.D. +0.6 +0.4
carbon source octanoate (C) N.D. +1.3 N.D. +0.3 -0.4
carbon source L-Histidine (C) N.D. +1.8 N.D. +0.3 -0.5
carbon source D-Glucosamine Hydrochloride (C) N.D. +1.8 N.D. -0.0 +0.4
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