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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1442 and PfGW456L13_1443 are separated by 115 nucleotides
PfGW456L13_1443 and PfGW456L13_1444 are separated by 160 nucleotides
PfGW456L13_1444 and PfGW456L13_1445 are separated by 15 nucleotides
PfGW456L13_1445 and PfGW456L13_1446 are separated by 162 nucleotides
PfGW456L13_1442 - DNA repair protein RadA, at 1,591,226 to 1,592,593
_1442
PfGW456L13_1443 - FIG00954896: hypothetical protein, at 1,592,709 to 1,593,077
_1443
PfGW456L13_1444 - Carbon starvation protein A, at 1,593,238 to 1,595,304
_1444
PfGW456L13_1445 - COG2879, Hypothetical small protein yjiX, at 1,595,320 to 1,595,517
_1445
PfGW456L13_1446 - COG0523: Putative GTPases (G3E family), at 1,595,680 to 1,596,651
_1446
Group
Condition
PfGW456L13
_1442
PfGW456L13
_1443
PfGW456L13
_1444
PfGW456L13
_1445
PfGW456L13
_1446
carbon source
L-Alanine (C)
-0.5
+0.2
-0.7
-0.8
+0.0
carbon source
D-Alanine (C)
-0.2
+0.1
-0.6
-0.6
-0.3
carbon source
a-Ketoglutaric (C)
-0.6
-0.3
+0.1
-0.3
-0.3
carbon source
Putrescine (C)
-0.2
-0.5
-0.0
-0.1
-0.4
carbon source
D-Galactose (C)
-0.4
-0.9
+0.2
-0.2
-0.0
nitrogen source
L-Phenylalanine (N)
+0.0
-0.6
+0.0
-0.1
-0.4
carbon source
D-Alanine (C)
+0.1
+0.3
-0.5
-0.6
-0.3
carbon source
D-Glucose (C)
-0.2
+0.1
-0.0
-0.2
-0.7
nitrogen source
D-Serine (N)
-0.1
-0.3
+0.1
-0.3
-0.3
carbon source
L-Valine (C)
+0.3
-0.1
-0.3
-0.6
-0.1
carbon source
L-Alanine (C)
+0.2
+0.2
-0.6
-0.6
-0.0
stress
Lomefloxacin 0.0004 mM
-1.0
+0.2
+0.1
+0.1
-0.2
carbon source
L-Histidine (C)
+0.3
-0.0
+0.0
-0.3
-0.4
carbon source
D-Lactate (C)
+0.1
+0.4
-0.2
-0.2
-0.5
carbon source
L-Arabinose (C)
+0.2
-0.4
+0.1
-0.2
+0.1
nitrogen source
NAG (N)
+0.0
-0.7
+0.2
+0.0
+0.1
carbon source
D-Fructose (C)
+0.4
-0.4
-0.1
-0.1
-0.1
stress
Aluminum chloride 5 mM
-0.3
-0.1
+0.1
-0.3
+0.3
carbon source
L-Malic (C)
+0.7
-0.3
-0.2
-0.1
-0.3
carbon source
Trisodium citrate (C)
-0.0
+0.4
-0.0
-0.1
-0.4
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
-0.1
+0.2
+0.4
carbon source
L-Glutamine (C)
-0.1
+0.5
-0.0
-0.3
-0.2
carbon source
L-Lactate (C)
+0.2
+0.3
-0.3
-0.5
+0.3
carbon source
D-Lactate (C)
+0.5
-0.1
-0.2
-0.6
+0.2
carbon source
Tween 20 (C)
+0.1
+0.4
-0.1
-0.2
-0.1
carbon source
D-Serine (C)
-0.0
+1.0
-0.3
-0.5
+0.0
carbon source
D-Serine (C)
-0.0
+1.9
-0.3
-0.6
-0.5
lb
LB
-0.1
+0.3
+0.1
+0.1
+0.3
carbon source
D-Fructose (C)
+0.4
+0.4
-0.1
+0.2
+0.0
carbon source
L-Malic (C)
+0.2
+0.1
+0.0
+0.2
+0.5
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