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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1426 and PfGW456L13_1427 are separated by 36 nucleotides
PfGW456L13_1427 and PfGW456L13_1428 overlap by 4 nucleotides
PfGW456L13_1428 and PfGW456L13_1429 are separated by 140 nucleotides
PfGW456L13_1429 and PfGW456L13_1430 are separated by 113 nucleotides
PfGW456L13_1426 - Transcriptional regulator, TetR family, at 1,575,705 to 1,576,382
_1426
PfGW456L13_1427 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 1,576,419 to 1,577,282
_1427
PfGW456L13_1428 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 1,577,279 to 1,577,719
_1428
PfGW456L13_1429 - Transcriptional regulator, LysR family, at 1,577,860 to 1,578,771
_1429
PfGW456L13_1430 - tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35), at 1,578,885 to 1,579,964
_1430
Group
Condition
PfGW456L13
_1426
PfGW456L13
_1427
PfGW456L13
_1428
PfGW456L13
_1429
PfGW456L13
_1430
carbon source
a-Ketoglutaric (C)
-0.1
-0.0
-1.1
-0.4
-0.2
carbon source
L-Lactate (C)
-0.0
+0.2
-1.9
+0.1
-0.0
nitrogen source
D-Serine (N)
-0.3
-0.3
-0.4
+0.0
-0.3
carbon source
D,L-Lactate (C)
-0.2
+0.0
-0.9
+0.0
-0.2
carbon source
L-Arabinose (C)
-0.3
+0.5
-0.8
-0.4
-0.1
stress
A22 0.04 mg/ml
-0.1
+0.0
-0.7
-0.1
-0.1
nitrogen source
nitrate (N)
-0.1
-0.1
-0.7
-0.3
+0.1
nitrogen source
Gly-Glu (N)
-0.4
+0.0
-0.6
-0.0
+0.1
carbon source
L-Tryptophan (C)
-0.1
+0.3
-0.2
-0.1
-0.8
carbon source
L-Histidine (C)
-0.1
+0.1
-0.8
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
-0.1
+0.1
-0.5
+0.1
-0.4
carbon source
Putrescine (C)
+0.0
+0.2
-0.2
+0.2
-0.7
carbon source
Trisodium citrate (C)
-0.1
-0.3
+0.6
+0.0
-0.7
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.6
-0.3
+0.4
+0.1
carbon source
D-Lactate (C)
-0.2
+0.1
-0.4
-0.2
+0.2
carbon source
L-Malic (C)
-0.1
-0.2
+0.4
-0.3
-0.2
carbon source
L-Tryptophan (C)
+0.1
+0.2
+0.4
+0.0
-0.8
carbon source
L-Arabinose (C)
-0.1
+0.0
+0.5
+0.0
-0.5
carbon source
D-Galactose (C)
-0.3
+0.2
-0.6
+0.3
+0.2
carbon source
L-Histidine (C)
+0.3
-0.3
+0.3
+0.3
-0.5
carbon source
octanoate (C)
+0.1
+0.2
+1.1
+0.1
-1.5
carbon source
Glycerol (C)
-0.2
+0.2
-0.2
+0.4
-0.1
carbon source
L-Phenylalanine (C)
+0.6
-0.0
-0.2
-0.1
-0.2
carbon source
L-Phenylalanine (C)
+0.7
-0.0
+0.3
-0.1
-0.4
stress
nitrite 10 mM
-0.3
+0.0
+1.0
+0.0
-0.1
nitrogen source
Ammonium chloride (N)
-0.0
+0.0
+0.6
+0.2
-0.2
carbon source
D-Fructose (C)
+0.1
+0.4
+0.0
+0.4
-0.2
carbon source
D-Lactate (C)
-0.2
+0.6
+0.2
+0.4
-0.2
carbon source
D-Gluconic Acid (C)
-0.0
+0.6
+0.6
+0.1
-0.4
stress
Aluminum chloride 5 mM
+0.3
-0.2
+0.9
+0.2
-0.1
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