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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1395 and PfGW456L13_1396 are separated by 24 nucleotides
PfGW456L13_1396 and PfGW456L13_1397 are separated by 227 nucleotides
PfGW456L13_1397 and PfGW456L13_1398 are separated by 21 nucleotides
PfGW456L13_1398 and PfGW456L13_1399 are separated by 390 nucleotides
PfGW456L13_1395 - ATP-dependent helicase HrpB, at 1,541,286 to 1,543,802
_1395
PfGW456L13_1396 - Cys regulon transcriptional activator CysB, at 1,543,827 to 1,544,747
_1396
PfGW456L13_1397 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,544,975 to 1,546,465
_1397
PfGW456L13_1398 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 1,546,487 to 1,547,857
_1398
PfGW456L13_1399 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 1,548,248 to 1,549,234
_1399
Group
Condition
PfGW456L13
_1395
PfGW456L13
_1396
PfGW456L13
_1397
PfGW456L13
_1398
PfGW456L13
_1399
stress
Nickel (II) chloride 1 mM
-0.6
+0.1
-0.2
-0.1
+0.0
carbon source
D-Galactose (C)
-0.1
-0.3
+0.1
-0.2
-0.1
carbon source
D-Lactate (C)
-0.2
-0.1
+0.1
-0.0
-0.4
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.1
-0.4
-0.2
-0.0
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.5
+0.2
-0.1
lb
LB
-0.1
-0.4
+0.2
-0.0
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.3
+0.4
+0.0
-0.3
carbon source
D-Fructose (C)
+0.4
+0.1
-0.1
-0.6
-0.1
carbon source
L-Tryptophan (C)
-0.0
-0.4
+0.2
+0.2
-0.3
carbon source
Putrescine (C)
-0.2
-0.3
+0.1
-0.1
+0.2
carbon source
Tween 20 (C)
+0.1
-0.0
+0.2
-0.3
-0.2
carbon source
L-Lactate (C)
+0.1
+0.4
-0.0
-0.6
-0.1
carbon source
Glycerol (C)
-0.1
-0.4
+0.0
+0.2
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.2
+0.3
-0.1
+0.2
stress
Fusidic 0.03 mg/ml
+0.1
+0.4
-0.1
-0.1
-0.2
nitrogen source
L-Tryptophan (N)
+0.2
+0.2
+0.0
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+0.4
+0.2
+0.1
-0.1
-0.3
carbon source
L-Asparagine (C)
-0.1
+0.3
+0.3
-0.1
+0.1
carbon source
L-Valine (C)
+0.4
+0.1
+0.3
-0.2
-0.1
carbon source
D,L-Lactate (C)
-0.0
+0.4
+0.2
-0.1
+0.0
nitrogen source
D-Alanine (N)
+0.2
+0.2
+0.2
+0.1
-0.1
stress
Chloride 400 mM
+0.3
+0.1
+0.2
+0.1
-0.2
carbon source
succinate (C)
+0.3
+0.1
+0.2
+0.2
-0.1
nitrogen source
L-Glutamine (N)
+0.2
+0.1
+0.2
+0.2
-0.1
carbon source
L-Malic (C)
+0.2
+0.1
+0.3
+0.2
-0.2
nitrogen source
L-Isoleucine (N)
+0.3
-0.2
+0.4
+0.1
+0.1
nitrogen source
L-Phenylalanine (N)
+0.2
+0.2
+0.1
+0.1
+0.1
nitrogen source
L-Citrulline (N)
+0.2
+0.4
+0.3
-0.0
-0.0
carbon source
a-Ketoglutaric (C)
-0.0
+0.4
+0.2
+0.1
+0.2
carbon source
D-Fructose (C)
+0.1
+0.7
+0.0
+0.3
+0.3
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