Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_1342 and PfGW456L13_1343 are separated by 299 nucleotidesPfGW456L13_1343 and PfGW456L13_1344 are separated by 157 nucleotidesPfGW456L13_1344 and PfGW456L13_1345 overlap by 4 nucleotidesPfGW456L13_1345 and PfGW456L13_1346 overlap by 8 nucleotides PfGW456L13_1342 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,485,874 to 1,487,394 _1342 PfGW456L13_1343 - Nitrogen regulation protein NR(I), at 1,487,694 to 1,489,607 _1343 PfGW456L13_1344 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 1,489,765 to 1,491,114 _1344 PfGW456L13_1345 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 1,491,111 to 1,491,743 _1345 PfGW456L13_1346 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,491,736 to 1,492,020 _1346
Group Condition PfGW456L13_1342 PfGW456L13_1343 PfGW456L13_1344 PfGW456L13_1345 PfGW456L13_1346
carbon source octanoate (C) -0.1 -0.0 -2.1 N.D. -0.8
carbon source D-Fructose (C) -0.1 +0.1 -1.0 N.D. -0.7
carbon source D-Alanine (C) +0.1 -0.1 -1.3 N.D. -0.0
carbon source D-Serine (C) -0.1 +0.1 -1.1 N.D. -0.2
carbon source D-Mannose (C) -0.0 -0.2 -1.0 N.D. -0.1
carbon source D-Glucose (C) -0.0 -0.2 -1.4 N.D. +0.4
carbon source Trisodium citrate (C) -0.7 -0.6 -0.7 N.D. +0.7
carbon source Putrescine (C) -0.5 -0.4 +0.4 N.D. -0.6
stress Chloride 400 mM -0.2 +0.0 -0.6 N.D. -0.2
stress Vancomycin 0.5 mg/ml -0.1 -0.1 -1.1 N.D. +0.3
carbon source D-Alanine (C) -0.1 -0.2 -0.4 N.D. -0.3
carbon source L-Histidine (C) -0.0 -0.0 -0.5 N.D. -0.4
nitrogen source L-Threonine (N) +0.0 +0.0 -1.0 N.D. +0.1
carbon source D-Lactate (C) -0.2 -0.3 -0.6 N.D. +0.2
stress Lomefloxacin 0.0004 mM -0.1 -0.1 +0.1 N.D. -0.6
carbon source L-Lactate (C) +0.0 -0.2 -0.7 N.D. +0.2
stress Thallium(I) acetate 0.002 mg/ml -0.1 +0.2 -0.2 N.D. -0.5
carbon source L-Malic (C) +0.2 -0.1 -0.8 N.D. +0.1
carbon source D-Galactose (C) +0.1 -0.3 -0.5 N.D. +0.2
carbon source L-Arabinose (C) +0.1 +0.3 -0.2 N.D. -0.7
carbon source D-Serine (C) -0.1 +0.0 -0.5 N.D. +0.4
nitrogen source Ammonium chloride (N) +0.2 +0.1 -0.5 N.D. +0.2
carbon source L-Arabinose (C) +0.2 -0.1 +0.5 N.D. -0.4
carbon source a-Ketoglutaric (C) +0.0 +0.1 +0.6 N.D. -0.5
control LB +0.0 +0.2 +0.6 N.D. -0.3
nitrogen source D-Serine (N) -0.2 +0.2 +0.3 N.D. +0.4
stress Dimethyl Sulfoxide 7.5 vol% +0.2 +0.0 +0.8 N.D. -0.1
nitrogen source Putrescine (N) +0.1 +0.2 +0.5 N.D. +0.2
carbon source L-Malic (C) -0.2 +0.1 +0.7 N.D. +0.4
nitrogen source L-Valine (N) +0.1 +0.0 +0.9 N.D. +0.2
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