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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1342 and PfGW456L13_1343 are separated by 299 nucleotides
PfGW456L13_1343 and PfGW456L13_1344 are separated by 157 nucleotides
PfGW456L13_1344 and PfGW456L13_1345 overlap by 4 nucleotides
PfGW456L13_1345 and PfGW456L13_1346 overlap by 8 nucleotides
PfGW456L13_1342 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,485,874 to 1,487,394
_1342
PfGW456L13_1343 - Nitrogen regulation protein NR(I), at 1,487,694 to 1,489,607
_1343
PfGW456L13_1344 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 1,489,765 to 1,491,114
_1344
PfGW456L13_1345 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 1,491,111 to 1,491,743
_1345
PfGW456L13_1346 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,491,736 to 1,492,020
_1346
Group
Condition
PfGW456L13
_1342
PfGW456L13
_1343
PfGW456L13
_1344
PfGW456L13
_1345
PfGW456L13
_1346
carbon source
octanoate (C)
-0.1
-0.0
-2.1
N.D.
-0.8
carbon source
D-Fructose (C)
-0.1
+0.1
-1.0
N.D.
-0.7
carbon source
D-Alanine (C)
+0.1
-0.1
-1.3
N.D.
-0.0
carbon source
D-Serine (C)
-0.1
+0.1
-1.1
N.D.
-0.2
carbon source
D-Mannose (C)
-0.0
-0.2
-1.0
N.D.
-0.1
carbon source
D-Glucose (C)
-0.0
-0.2
-1.4
N.D.
+0.4
carbon source
Trisodium citrate (C)
-0.7
-0.6
-0.7
N.D.
+0.7
carbon source
Putrescine (C)
-0.5
-0.4
+0.4
N.D.
-0.6
stress
Chloride 400 mM
-0.2
+0.0
-0.6
N.D.
-0.2
stress
Vancomycin 0.5 mg/ml
-0.1
-0.1
-1.1
N.D.
+0.3
carbon source
D-Alanine (C)
-0.1
-0.2
-0.4
N.D.
-0.3
carbon source
L-Histidine (C)
-0.0
-0.0
-0.5
N.D.
-0.4
nitrogen source
L-Threonine (N)
+0.0
+0.0
-1.0
N.D.
+0.1
carbon source
D-Lactate (C)
-0.2
-0.3
-0.6
N.D.
+0.2
stress
Lomefloxacin 0.0004 mM
-0.1
-0.1
+0.1
N.D.
-0.6
carbon source
L-Lactate (C)
+0.0
-0.2
-0.7
N.D.
+0.2
stress
Thallium(I) acetate 0.002 mg/ml
-0.1
+0.2
-0.2
N.D.
-0.5
carbon source
L-Malic (C)
+0.2
-0.1
-0.8
N.D.
+0.1
carbon source
D-Galactose (C)
+0.1
-0.3
-0.5
N.D.
+0.2
carbon source
L-Arabinose (C)
+0.1
+0.3
-0.2
N.D.
-0.7
carbon source
D-Serine (C)
-0.1
+0.0
-0.5
N.D.
+0.4
nitrogen source
Ammonium chloride (N)
+0.2
+0.1
-0.5
N.D.
+0.2
carbon source
L-Arabinose (C)
+0.2
-0.1
+0.5
N.D.
-0.4
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
+0.6
N.D.
-0.5
control
LB
+0.0
+0.2
+0.6
N.D.
-0.3
nitrogen source
D-Serine (N)
-0.2
+0.2
+0.3
N.D.
+0.4
stress
Dimethyl Sulfoxide 7.5 vol%
+0.2
+0.0
+0.8
N.D.
-0.1
nitrogen source
Putrescine (N)
+0.1
+0.2
+0.5
N.D.
+0.2
carbon source
L-Malic (C)
-0.2
+0.1
+0.7
N.D.
+0.4
nitrogen source
L-Valine (N)
+0.1
+0.0
+0.9
N.D.
+0.2
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