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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1284 and PfGW456L13_1285 are separated by 9 nucleotides
PfGW456L13_1285 and PfGW456L13_1286 are separated by 162 nucleotides
PfGW456L13_1286 and PfGW456L13_1287 are separated by 30 nucleotides
PfGW456L13_1287 and PfGW456L13_1288 are separated by 221 nucleotides
PfGW456L13_1284 - Putative transport protein, at 1,423,838 to 1,425,235
_1284
PfGW456L13_1285 - Single-stranded DNA-binding protein, at 1,425,245 to 1,425,763
_1285
PfGW456L13_1286 - Transcriptional Regulator, AraC family, at 1,425,926 to 1,426,798
_1286
PfGW456L13_1287 - membrane protein, at 1,426,829 to 1,427,329
_1287
PfGW456L13_1288 - Isochorismatase (EC 3.3.2.1), at 1,427,551 to 1,428,111
_1288
Group
Condition
PfGW456L13
_1284
PfGW456L13
_1285
PfGW456L13
_1286
PfGW456L13
_1287
PfGW456L13
_1288
carbon source
a-Ketoglutaric (C)
-2.4
N.D.
-0.1
+0.1
-0.8
nitrogen source
D-Serine (N)
-2.2
N.D.
-0.3
-0.1
-0.1
carbon source
L-Malic (C)
-2.1
N.D.
-0.3
+0.1
-0.2
nitrogen source
L-Serine (N)
-1.8
N.D.
+0.1
-0.0
-0.5
carbon source
D-Mannose (C)
-2.0
N.D.
+0.0
+0.0
-0.1
nitrogen source
Gly-Glu (N)
-1.7
N.D.
+0.1
+0.0
-0.4
carbon source
D-Fructose (C)
-1.5
N.D.
-0.0
+0.1
-0.6
nitrogen source
Gly-DL-Asp (N)
-0.9
N.D.
-0.1
-0.0
-1.0
carbon source
D-Lactate (C)
-1.4
N.D.
+0.1
+0.3
-0.9
carbon source
Glycerol (C)
-2.2
N.D.
+0.1
+0.2
-0.0
nitrogen source
Putrescine (N)
-1.3
N.D.
-0.1
-0.0
-0.3
carbon source
L-Tryptophan (C)
-0.7
N.D.
+0.1
-0.2
-1.0
carbon source
D-Gluconic Acid (C)
-0.1
N.D.
+0.1
-0.1
-1.6
nitrogen source
Cytosine (N)
-1.4
N.D.
-0.1
-0.0
-0.1
nitrogen source
L-Aspartic Acid (N)
-1.6
N.D.
+0.1
+0.1
-0.1
carbon source
D-Galactose (C)
-1.0
N.D.
-0.2
-0.2
-0.2
carbon source
Trisodium citrate (C)
-0.9
N.D.
-0.1
+0.0
-0.5
stress
Dimethyl Sulfoxide 7.5 vol%
-1.7
N.D.
-0.1
+0.1
+0.2
carbon source
Putrescine (C)
-0.5
N.D.
+0.2
-0.2
-0.8
nitrogen source
L-Leucine (N)
-1.3
N.D.
+0.1
+0.0
-0.3
carbon source
D,L-Lactate (C)
-1.4
N.D.
+0.1
-0.0
-0.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-1.5
N.D.
+0.0
+0.0
+0.2
carbon source
D-Fructose (C)
-1.5
N.D.
+0.1
+0.1
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-1.1
N.D.
-0.2
+0.2
+0.1
carbon source
octanoate (C)
-1.2
N.D.
-0.1
-0.1
+0.5
stress
Vancomycin 0.125 mg/ml
-1.3
N.D.
+0.1
-0.1
+0.5
carbon source
D-Lactate (C)
-1.3
N.D.
+0.3
+0.2
+0.1
carbon source
Glycerol (C)
-1.0
N.D.
-0.4
+0.1
+0.5
carbon source
L-Alanine (C)
-1.1
N.D.
+0.1
+0.1
+0.3
stress
Lomefloxacin 0.0004 mM
-0.8
N.D.
-0.2
-0.0
+0.7
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