Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_1110 and PfGW456L13_1111 are separated by 54 nucleotidesPfGW456L13_1111 and PfGW456L13_1112 are separated by 30 nucleotidesPfGW456L13_1112 and PfGW456L13_1113 are separated by 129 nucleotidesPfGW456L13_1113 and PfGW456L13_1114 are separated by 193 nucleotides PfGW456L13_1110 - GbcA Glycine betaine demethylase subunit A, at 1,232,339 to 1,233,634 _1110 PfGW456L13_1111 - GbcA Glycine betaine demethylase subunit A, at 1,233,689 to 1,233,886 _1111 PfGW456L13_1112 - GbcB Glycine betaine demethylase subunit B, at 1,233,917 to 1,235,017 _1112 PfGW456L13_1113 - Probable short-chain dehydrogenase, at 1,235,147 to 1,235,971 _1113 PfGW456L13_1114 - L-threonine aldolase (EC 4.1.2.5) (from data), at 1,236,165 to 1,237,205 _1114
Group Condition PfGW456L13_1110 PfGW456L13_1111 PfGW456L13_1112 PfGW456L13_1113 PfGW456L13_1114
nitrogen source L-Threonine (N) +0.1 -0.1 +0.1 +0.4 -2.5
carbon source a-Ketoglutaric (C) -0.3 -0.5 -0.3 -0.1 -0.3
carbon source L-Lactate (C) -0.1 -0.2 -0.3 +0.1 -0.7
carbon source Trisodium citrate (C) -0.1 -0.5 -0.0 +0.0 -0.3
carbon source D-Glucose (C) -0.2 -0.8 +0.1 +0.0 -0.1
stress Cobalt chloride 0.16 mM +0.0 -0.5 -0.1 -0.0 -0.2
stress Nickel (II) chloride 1 mM +0.0 -0.4 -0.2 +0.1 -0.5
carbon source L-Glutamine (C) -0.2 +0.1 +0.0 -0.2 -0.5
carbon source L-Alanine (C) -0.1 -0.4 -0.2 -0.1 +0.1
carbon source L-Tryptophan (C) -0.1 -0.5 +0.1 +0.3 -0.5
carbon source L-Malic (C) -0.2 -0.4 +0.2 -0.1 -0.1
nitrogen source Gly-DL-Asp (N) +0.1 -0.4 +0.0 +0.3 -0.4
carbon source D-Serine (C) +0.2 -0.2 -0.1 +0.1 -0.2
carbon source D-Gluconic Acid (C) +0.0 -0.7 +0.3 +0.2 -0.1
stress Zinc 1 mM +0.2 -0.2 -0.1 +0.1 -0.3
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x -0.2 -0.2 +0.1 -0.1 +0.3
nitrogen source Gly-Glu (N) +0.3 -0.3 -0.2 -0.0 +0.1
carbon source D-Glucosamine Hydrochloride (C) +0.2 -0.1 +0.0 +0.4 -0.6
stress Fusidic 0.08 mg/ml +0.2 +0.1 +0.2 -0.2 -0.2
carbon source D-Lactate (C) -0.2 +0.4 +0.1 -0.2 -0.1
carbon source D-Lactate (C) -0.2 +0.0 +0.1 +0.3 -0.3
control LB +0.2 +0.2 +0.2 -0.1 -0.3
nitrogen source L-Glutamine (N) +0.0 +0.2 -0.1 +0.3 -0.2
carbon source octanoate (C) -0.2 +0.1 +0.1 +0.5 -0.2
nitrogen source L-Valine (N) +0.0 -0.2 -0.3 +0.2 +0.8
carbon source L-Arabinose (C) -0.1 +0.2 +0.1 -0.1 +0.4
carbon source D-Gluconic Acid (C) +0.0 -0.2 +0.3 +0.0 +0.4
carbon source Putrescine (C) +0.0 +0.3 +0.2 -0.0 +0.4
carbon source D-Fructose (C) +0.2 +0.4 -0.1 +0.1 +0.2
carbon source succinate (C) +0.3 +0.4 +0.0 +0.1 +0.3
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