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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1110 and PfGW456L13_1111 are separated by 54 nucleotides
PfGW456L13_1111 and PfGW456L13_1112 are separated by 30 nucleotides
PfGW456L13_1112 and PfGW456L13_1113 are separated by 129 nucleotides
PfGW456L13_1113 and PfGW456L13_1114 are separated by 193 nucleotides
PfGW456L13_1110 - GbcA Glycine betaine demethylase subunit A, at 1,232,339 to 1,233,634
_1110
PfGW456L13_1111 - GbcA Glycine betaine demethylase subunit A, at 1,233,689 to 1,233,886
_1111
PfGW456L13_1112 - GbcB Glycine betaine demethylase subunit B, at 1,233,917 to 1,235,017
_1112
PfGW456L13_1113 - Probable short-chain dehydrogenase, at 1,235,147 to 1,235,971
_1113
PfGW456L13_1114 - L-threonine aldolase (EC 4.1.2.5)
(from data)
, at 1,236,165 to 1,237,205
_1114
Group
Condition
PfGW456L13
_1110
PfGW456L13
_1111
PfGW456L13
_1112
PfGW456L13
_1113
PfGW456L13
_1114
nitrogen source
L-Threonine (N)
+0.1
-0.1
+0.1
+0.4
-2.5
carbon source
a-Ketoglutaric (C)
-0.3
-0.5
-0.3
-0.1
-0.3
carbon source
L-Lactate (C)
-0.1
-0.2
-0.3
+0.1
-0.7
carbon source
Trisodium citrate (C)
-0.1
-0.5
-0.0
+0.0
-0.3
carbon source
D-Glucose (C)
-0.2
-0.8
+0.1
+0.0
-0.1
stress
Cobalt chloride 0.16 mM
+0.0
-0.5
-0.1
-0.0
-0.2
stress
Nickel (II) chloride 1 mM
+0.0
-0.4
-0.2
+0.1
-0.5
carbon source
L-Glutamine (C)
-0.2
+0.1
+0.0
-0.2
-0.5
carbon source
L-Alanine (C)
-0.1
-0.4
-0.2
-0.1
+0.1
carbon source
L-Tryptophan (C)
-0.1
-0.5
+0.1
+0.3
-0.5
carbon source
L-Malic (C)
-0.2
-0.4
+0.2
-0.1
-0.1
nitrogen source
Gly-DL-Asp (N)
+0.1
-0.4
+0.0
+0.3
-0.4
carbon source
D-Serine (C)
+0.2
-0.2
-0.1
+0.1
-0.2
carbon source
D-Gluconic Acid (C)
+0.0
-0.7
+0.3
+0.2
-0.1
stress
Zinc 1 mM
+0.2
-0.2
-0.1
+0.1
-0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-0.2
+0.1
-0.1
+0.3
nitrogen source
Gly-Glu (N)
+0.3
-0.3
-0.2
-0.0
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.1
+0.0
+0.4
-0.6
stress
Fusidic 0.08 mg/ml
+0.2
+0.1
+0.2
-0.2
-0.2
carbon source
D-Lactate (C)
-0.2
+0.4
+0.1
-0.2
-0.1
carbon source
D-Lactate (C)
-0.2
+0.0
+0.1
+0.3
-0.3
control
LB
+0.2
+0.2
+0.2
-0.1
-0.3
nitrogen source
L-Glutamine (N)
+0.0
+0.2
-0.1
+0.3
-0.2
carbon source
octanoate (C)
-0.2
+0.1
+0.1
+0.5
-0.2
nitrogen source
L-Valine (N)
+0.0
-0.2
-0.3
+0.2
+0.8
carbon source
L-Arabinose (C)
-0.1
+0.2
+0.1
-0.1
+0.4
carbon source
D-Gluconic Acid (C)
+0.0
-0.2
+0.3
+0.0
+0.4
carbon source
Putrescine (C)
+0.0
+0.3
+0.2
-0.0
+0.4
carbon source
D-Fructose (C)
+0.2
+0.4
-0.1
+0.1
+0.2
carbon source
succinate (C)
+0.3
+0.4
+0.0
+0.1
+0.3
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