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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1023 and PfGW456L13_1024 are separated by 10 nucleotides
PfGW456L13_1024 and PfGW456L13_1025 are separated by 156 nucleotides
PfGW456L13_1025 and PfGW456L13_1026 are separated by 37 nucleotides
PfGW456L13_1026 and PfGW456L13_1027 overlap by 8 nucleotides
PfGW456L13_1023 - twitching motility protein PilH, at 1,132,882 to 1,133,247
_1023
PfGW456L13_1024 - type IV pili signal transduction protein PilI, at 1,133,258 to 1,133,797
_1024
PfGW456L13_1025 - type IV pilus biogenesis protein PilJ, at 1,133,954 to 1,136,014
_1025
PfGW456L13_1026 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 1,136,052 to 1,142,072
_1026
PfGW456L13_1027 - Chemotaxis signal transduction protein, at 1,142,065 to 1,142,526
_1027
Group
Condition
PfGW456L13
_1023
PfGW456L13
_1024
PfGW456L13
_1025
PfGW456L13
_1026
PfGW456L13
_1027
stress
Dimethyl Sulfoxide 7.5 vol%
-1.1
-0.0
+0.3
-0.4
-0.8
carbon source
L-Arabinose (C)
-0.1
+0.4
-0.1
+0.1
-2.3
carbon source
Putrescine (C)
-0.5
+0.1
+0.1
+0.1
-1.6
nitrogen source
D-Serine (N)
+0.4
-0.6
-1.2
-0.2
+0.1
carbon source
D-Lactate (C)
-1.2
+0.4
-0.5
+0.2
-0.2
stress
Aluminum chloride 5 mM
+0.4
-0.4
-0.6
+0.1
-0.8
carbon source
L-Glutamine (C)
-0.3
-0.2
+0.2
-0.2
-0.8
carbon source
D-Galactose (C)
-0.8
+0.3
-0.1
-0.1
-0.4
stress
Lomefloxacin 0.0004 mM
-0.2
-0.1
-0.4
+0.0
-0.6
carbon source
D-Galactose (C)
-0.6
+0.3
+0.0
-0.1
-0.8
stress
Aluminum chloride 2.5 mM
+0.3
-0.8
-0.3
+0.1
-0.4
carbon source
a-Ketoglutaric (C)
-0.3
-0.1
+0.2
-0.1
-0.7
carbon source
L-Alanine (C)
-0.4
+0.2
-0.2
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
-0.9
+0.5
-0.0
-0.1
-0.3
carbon source
succinate (C)
-0.6
+0.4
-0.3
+0.0
-0.3
carbon source
L-Valine (C)
-1.1
+0.5
+0.5
-0.5
-0.0
nitrogen source
L-Citrulline (N)
-0.6
+0.1
+0.4
-0.3
-0.2
carbon source
D-Glucose (C)
-0.3
+0.7
-0.4
-0.2
-0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.4
+0.2
-0.2
-0.3
+0.4
carbon source
L-Lactate (C)
+0.1
+0.5
-0.1
+0.1
-0.7
nitrogen source
D-Alanine (N)
-0.4
+0.3
+0.4
-0.1
-0.3
carbon source
Tween 20 (C)
-0.5
+0.2
+0.4
-0.1
+0.2
carbon source
L-Valine (C)
-0.8
+0.4
+0.4
-0.3
+0.4
carbon source
D-Fructose (C)
-0.1
+0.6
-0.4
-0.1
+0.2
nitrogen source
L-Isoleucine (N)
-0.9
+0.6
+0.7
-0.2
-0.0
carbon source
octanoate (C)
-0.7
+0.2
+1.3
-0.1
-0.4
nitrogen source
L-Valine (N)
-1.4
+0.7
+1.0
-0.3
+0.4
carbon source
D-Gluconic Acid (C)
-0.6
+0.2
+0.5
-0.2
+0.7
nitrogen source
nitrate (N)
-0.4
+0.2
+0.6
+0.0
+0.4
carbon source
Trisodium citrate (C)
-0.2
+0.6
+0.2
+0.2
+0.5
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