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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_1008 and PfGW456L13_1009 are separated by 4 nucleotides
PfGW456L13_1009 and PfGW456L13_1010 are separated by 10 nucleotides
PfGW456L13_1010 and PfGW456L13_1011 are separated by 35 nucleotides
PfGW456L13_1011 and PfGW456L13_1012 are separated by 56 nucleotides
PfGW456L13_1008 - COG1872, at 1,120,971 to 1,121,267
_1008
PfGW456L13_1009 - Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock), at 1,121,272 to 1,121,862
_1009
PfGW456L13_1010 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 1,121,873 to 1,122,691
_1010
PfGW456L13_1011 - Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC, at 1,122,727 to 1,123,413
_1011
PfGW456L13_1012 - Twitching motility protein PilT, at 1,123,470 to 1,124,504
_1012
Group
Condition
PfGW456L13
_1008
PfGW456L13
_1009
PfGW456L13
_1010
PfGW456L13
_1011
PfGW456L13
_1012
nitrogen source
L-Asparagine (N)
-0.5
-2.2
-5.4
-2.5
-0.0
carbon source
a-Ketoglutaric (C)
+0.2
-3.9
-5.4
-2.0
+0.7
carbon source
L-Tryptophan (C)
-0.7
-3.2
-5.9
-1.2
+0.6
carbon source
D-Fructose (C)
+0.8
-2.7
-5.3
-1.8
-0.9
carbon source
Tween 20 (C)
-0.4
-0.5
-4.4
-4.1
-0.2
carbon source
D-Galactose (C)
+0.7
-1.9
-5.0
-2.8
-0.7
carbon source
D-Gluconic Acid (C)
+0.5
+0.2
-6.3
-3.3
-0.4
carbon source
L-Phenylalanine (C)
+0.4
-2.2
-6.2
-0.8
-0.6
carbon source
D-Alanine (C)
-0.1
-3.4
-5.6
-0.4
+0.2
carbon source
L-Tryptophan (C)
+0.1
-1.6
-6.3
-1.2
-0.2
nitrogen source
nitrate (N)
-0.2
-1.7
-6.3
-1.0
+0.1
carbon source
L-Malic (C)
+0.4
-2.9
-6.3
-0.7
+0.5
carbon source
D,L-Lactate (C)
-0.1
-3.6
-5.5
-0.3
+0.4
carbon source
D-Galactose (C)
-0.1
-2.3
-6.6
+0.3
-0.1
carbon source
L-Valine (C)
-0.8
-1.6
-5.4
-0.5
-0.6
nitrogen source
Ammonium chloride (N)
-0.7
-1.9
-5.9
-0.8
+0.6
carbon source
L-Phenylalanine (C)
+0.2
-2.3
-6.3
-0.4
+0.3
carbon source
D-Mannose (C)
-0.4
-1.4
-6.4
-0.2
-0.1
carbon source
Trisodium citrate (C)
+0.0
-2.7
-5.8
+0.3
+0.0
nitrogen source
D-Alanine (N)
-0.2
-2.0
-5.6
-0.4
+0.1
carbon source
L-Histidine (C)
+0.9
-1.5
-6.5
-1.0
+0.0
nitrogen source
L-Histidine (N)
-0.6
-0.8
-5.6
-1.1
+0.3
carbon source
L-Asparagine (C)
-0.3
-1.5
-5.3
-0.8
+0.4
carbon source
D-Fructose (C)
+0.7
-0.6
-6.3
-0.9
-0.3
carbon source
D-Lactate (C)
+0.7
-0.9
-6.3
-0.7
-0.3
nitrogen source
L-Phenylalanine (N)
+0.7
-1.0
-5.5
-1.2
+0.2
carbon source
L-Lactate (C)
-0.1
+0.4
-5.7
-1.8
+0.3
carbon source
Glycerol (C)
+0.8
-0.8
-6.6
+0.5
-0.6
nitrogen source
D-Serine (N)
-0.1
+0.6
-5.3
-2.2
+0.6
carbon source
D-Glucose (C)
+0.8
-0.6
-6.2
+0.8
+0.1
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