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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_1002 and PfGW456L13_1003 are separated by 9 nucleotides
PfGW456L13_1003 and PfGW456L13_1004 overlap by 4 nucleotides
PfGW456L13_1004 and PfGW456L13_1005 overlap by 4 nucleotides
PfGW456L13_1005 and PfGW456L13_1006 are separated by 26 nucleotides
PfGW456L13_1002 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 1,116,433 to 1,116,756
_1002
PfGW456L13_1003 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 1,116,766 to 1,117,971
_1003
PfGW456L13_1004 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 1,117,968 to 1,118,564
_1004
PfGW456L13_1005 - FIG003551: hypothetical protein, at 1,118,561 to 1,118,995
_1005
PfGW456L13_1006 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,022 to 1,119,642
_1006
Group
Condition
PfGW456L13
_1002
PfGW456L13
_1003
PfGW456L13
_1004
PfGW456L13
_1005
PfGW456L13
_1006
carbon source
D-Gluconic Acid (C)
-0.6
-0.8
-0.8
-0.3
-4.2
carbon source
D-Galactose (C)
-0.5
-0.5
-0.7
-0.2
-3.7
carbon source
a-Ketoglutaric (C)
+0.2
-0.2
-1.0
+0.1
-4.7
carbon source
L-Glutamine (C)
-0.0
-0.2
+0.4
-0.1
-5.3
carbon source
L-Arabinose (C)
-0.6
-0.5
+0.1
-0.1
-4.2
carbon source
D-Lactate (C)
-0.5
-0.5
-0.3
-0.1
-3.9
carbon source
L-Malic (C)
-0.0
-0.4
-0.6
+0.2
-4.2
carbon source
Trisodium citrate (C)
-0.5
+0.0
-0.3
-0.3
-3.9
carbon source
Tween 20 (C)
-0.2
-0.1
-0.2
-0.1
-4.4
carbon source
D-Mannose (C)
-0.3
-0.2
-0.7
-0.1
-3.7
nitrogen source
D-Serine (N)
-0.7
+0.5
-0.7
+0.2
-4.1
nitrogen source
L-Proline (N)
-0.6
-0.1
-0.3
+0.2
-4.1
carbon source
L-Lactate (C)
-0.7
-0.2
-0.3
+0.1
-3.7
nitrogen source
Ammonium chloride (N)
-0.2
-0.1
-0.0
+0.0
-4.5
carbon source
D,L-Lactate (C)
-0.4
-0.4
-0.2
+0.1
-3.7
carbon source
L-Glutamine (C)
-0.4
-0.2
+0.2
-0.1
-4.3
carbon source
a-Ketoglutaric (C)
-0.5
-0.6
-0.0
+0.1
-3.8
carbon source
D-Galactose (C)
-0.3
+0.1
+0.2
+0.2
-4.9
nitrogen source
L-Aspartic Acid (N)
-0.3
-0.1
-0.3
-0.0
-3.8
nitrogen source
NAG (N)
-0.3
-0.3
-0.5
+0.2
-3.6
carbon source
L-Histidine (C)
-0.2
-0.1
-0.2
+0.1
-4.1
carbon source
D-Lactate (C)
-0.0
-0.3
+0.1
-0.2
-3.9
carbon source
L-Malic (C)
-0.5
-0.0
+0.2
-0.1
-3.9
carbon source
L-Tryptophan (C)
-0.5
+0.2
+0.3
-0.0
-4.3
carbon source
D-Fructose (C)
+0.0
-0.3
+0.2
+0.0
-4.3
carbon source
L-Histidine (C)
-0.5
+0.2
+0.2
-0.0
-4.0
carbon source
Glycerol (C)
-0.7
+0.2
-0.2
+0.1
-3.4
carbon source
D-Glucose (C)
-0.4
+0.1
+0.4
+0.0
-4.0
carbon source
Glycerol (C)
+0.2
-0.2
+0.1
+0.2
-4.0
carbon source
L-Tryptophan (C)
+0.1
+0.4
+0.2
+0.2
-4.4
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