Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_t32 and PP_t33 are separated by 99 nucleotidesPP_t33 and PP_t34 are separated by 141 nucleotidesPP_t34 and PP_2003 are separated by 83 nucleotidesPP_2003 and PP_2004 are separated by 290 nucleotides PP_t32: PP_t32 - tRNA-Asp, at 2,271,540 to 2,271,616 _t32 PP_t33: PP_t33 - tRNA-Asp, at 2,271,716 to 2,271,792 _t33 PP_t34: PP_t34 - tRNA-Asp, at 2,271,934 to 2,272,010 _t34 PP_2003: PP_2003 - conserved protein of unknown function, at 2,272,094 to 2,273,035 _2003 PP_2004: PP_2004 - Transcriptional regulator, AraC family, at 2,273,326 to 2,274,366 _2004
Group Condition PP_t32 PP_t33 PP_t34 PP_2003 PP_2004
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 -0.4
nitrogen source Propandiamine (N) N.D. N.D. N.D. -1.4 -0.1
phage P. putida Sci small MOI 0.1 N.D. N.D. N.D. -0.7 -0.7
phage PUT 8 MOI 1 N.D. N.D. N.D. -1.0 -0.3
phage P. putida Sci Big MOI 0.1 N.D. N.D. N.D. -1.0 -0.2
stress Geraniol 1 vol% N.D. N.D. N.D. -1.1 -0.0
nitrogen source NAG (N); with MOPS N.D. N.D. N.D. -0.8 -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM N.D. N.D. N.D. -1.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. -1.0 -0.1
carbon source Lignin Monomers (C) N.D. N.D. N.D. -0.8 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.8 -0.2
carbon source butyrate (C) N.D. N.D. N.D. -0.7 -0.3
r2a control with 0.2x vogels R2A control with 0.2X Vogels N.D. N.D. N.D. -0.9 -0.1
phage P. putida PUT 7 MOI 1 N.D. N.D. N.D. -0.8 -0.2
carbon source butyrate (C) N.D. N.D. N.D. -0.8 -0.1
carbon source 1,3-Butandiol (C) N.D. N.D. N.D. -0.6 -0.3
stress MOPS minimal media_Glucose20mM with Chloride 200 mM N.D. N.D. N.D. -0.9 +0.1
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. N.D. -1.0 +0.2
carbon source 5-Aminovaleric 10 mM (C) N.D. N.D. N.D. +0.7 -0.3
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. N.D. N.D. +0.7 -0.3
nitrogen source Urea (N) N.D. N.D. N.D. +0.8 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. N.D. +0.9 -0.2
carbon source D-Glucose (C) N.D. N.D. N.D. +1.0 -0.2
no stress control Growth with no stress N.D. N.D. N.D. +1.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. +1.0 -0.1
no stress control Growth with no stress N.D. N.D. N.D. +0.9 +0.1
pH pH 9 N.D. N.D. N.D. +0.6 +0.4
carbon source carbon source 4-vinylphenol 0.1 mM N.D. N.D. N.D. +0.9 +0.1
temperature Growth at 30C N.D. N.D. N.D. +1.0 +0.1
pH pH 7 N.D. N.D. N.D. +1.0 +0.2
remove
PP_t32
plot		 remove
PP_t33
plot		 remove
PP_t34		 remove
PP_2003
plot		 remove
PP_2004
plot