Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_t09	PP_t10	PP_t11	PP_0626	PP_0627
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	-4.6	-1.0	-0.3	-4.2
stress	Growth with Chloride 200 mM	N.D.	-4.3	-3.2	-0.1	+0.8
pH	Growth at pH7 and (C) D-Glucose	N.D.	-4.3	-0.7	-0.6	+0.3
phage	P. putida PUT 7 MOI 1	N.D.	-3.5	-1.2	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.7	-2.1	+0.4	-0.3
temperature shift	Temperature shift 10_to_25; with MOPS	N.D.	-1.5	-2.7	+0.0	+0.1
pH	Valerolactone (C) pH 6.5	N.D.	-1.4	-0.8	-0.1	-1.6
pH	pH 4	N.D.	-1.2	+1.3	-0.6	-3.5
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	-2.9	-0.6	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	N.D.	-2.0	-2.2	+0.4	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-4.5	+0.3	+0.1	+0.5
carbon source	carbon source D-Glucose 55.5 mM	N.D.	-3.7	+3.3	-1.2	-1.7
carbon source	carbon source Bisabolene 48.9 mM	N.D.	-2.4	+1.3	-0.5	-1.1
pH	Growth at pH7 and (C) Trisodium citrate	N.D.	-0.7	-2.7	+0.2	+1.0
stress	Growth with Chloride 500 mM; with MOPS	N.D.	-1.4	-1.5	-0.1	+1.0
pH	pH 8	N.D.	-2.6	+1.8	-0.4	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.6	-0.3	+0.5	+0.5
pH	pH 7	N.D.	-1.9	+1.3	-0.4	-0.5
nitrogen source	nitrogen source nitrate 5mM	N.D.	-3.0	+0.2	+0.4	+0.9
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	-2.3	+0.4	-0.5	+1.5
temperature	Growth at 25C	N.D.	+1.1	-2.2	+0.3	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	N.D.	-1.4	+1.9	-0.3	-0.6
pH	pH 5	N.D.	-0.2	+1.9	-0.2	-1.5
carbon source	carbon source 4-vinylphenol 0.1 mM	N.D.	-1.6	+2.7	-0.4	-0.5
pH	pH 6	N.D.	-1.7	+2.7	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.8	+1.7	+0.5	-0.9
carbon source	carbon source Bisabolol 45 mM	N.D.	-1.1	+2.5	-0.5	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	N.D.	-1.0	+2.8	-0.1	-0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	N.D.	-0.3	+3.1	-0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+3.0	-0.9	+0.1	+1.0