Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0624 and PP_0625 are separated by 249 nucleotidesPP_0625 and PP_t07 are separated by 362 nucleotidesPP_t07 and PP_t08 are separated by 4 nucleotidesPP_t08 and PP_t09 are separated by 6 nucleotides PP_0624: PP_0624 - Uncharacterized protein YfiH, at 729,471 to 730,211 _0624 PP_0625: PP_0625 - Chaperone protein ClpB, at 730,461 to 733,025 _0625 PP_t07: PP_t07 - tRNA-Asn, at 733,388 to 733,463 _t07 PP_t08: PP_t08 - tRNA-Pro, at 733,468 to 733,544 _t08 PP_t09: PP_t09 - tRNA-Lys, at 733,551 to 733,626 _t09
Group Condition PP_0624 PP_0625 PP_t07 PP_t08 PP_t09
nitrogen source Nicotinic Acid (N) +0.0 -1.6 N.D. N.D. N.D.
carbon source L-Leucine (C) +0.1 -1.5 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.7 N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.9 -0.5 N.D. N.D. N.D.
temperature LB 42C -0.2 -1.2 N.D. N.D. N.D.
temperature LB 42C -0.3 -1.1 N.D. N.D. N.D.
nitrogen source Nicotinic Acid (N) +0.1 -1.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.7 N.D. N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.7 -0.4 N.D. N.D. N.D.
carbon source 1,3-Butandiol (C) -1.0 -0.1 N.D. N.D. N.D.
carbon source L-Leucine (C) +0.1 -1.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -0.1 N.D. N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.6 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.0 N.D. N.D. N.D.
pH Growth at pH6 and (C) Trisodium citrate -1.0 +0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 +0.3 N.D. N.D. N.D.
carbon source 3-Hydroxydecanoic (C) -1.0 +0.4 N.D. N.D. N.D.
phage PUT8 MOI 0.1 +0.9 -0.2 N.D. N.D. N.D.
phage P. put South MOI 0.1 +0.9 -0.2 N.D. N.D. N.D.
phage P. put PUT 10 MOI 10 +1.2 -0.3 N.D. N.D. N.D.
phage P. putida PUT10 MOI 1 +0.9 +0.1 N.D. N.D. N.D.
pH Growth at pH8 and (C) D-Glucose +0.4 +0.6 N.D. N.D. N.D.
phage P. put PUT 10 MOI 10 +1.1 -0.2 N.D. N.D. N.D.
phage P. putida South MOI 0.1 +0.8 +0.2 N.D. N.D. N.D.
phage P. putida South MOI 0.1 +0.9 +0.1 N.D. N.D. N.D.
phage P. putida PUT10 MOI 10 +1.2 +0.1 N.D. N.D. N.D.
phage P. putida PUT10 MOI 10 +1.3 +0.2 N.D. N.D. N.D.
remove
PP_0624
plot		 remove
PP_0625
plot		 remove
PP_t07		 remove
PP_t08
plot		 remove
PP_t09
plot