Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_16SE and PP_23SE are separated by 292 nucleotidesPP_23SE and PP_5SE are separated by 131 nucleotidesPP_5SE and PP_1157 are separated by 306 nucleotidesPP_1157 and PP_1159 are separated by 1255 nucleotides PP_16SE: PP_16SE - 16S ribosomal RNA, at 1,325,503 to 1,327,024 _16SE PP_23SE: PP_23SE - 23S ribosomal RNA, at 1,327,317 to 1,330,218 _23SE PP_5SE: PP_5SE - 5S ribosomal RNA, at 1,330,350 to 1,330,469 _5SE PP_1157: PP_1157 - Acetolactate synthase, at 1,330,776 to 1,332,419 _1157 PP_1159: PP_1159 - conserved membrane protein of unknown function, at 1,333,675 to 1,334,829 _1159
Group Condition PP_16SE PP_23SE PP_5SE PP_1157 PP_1159
temperature Growth at 25C N.D. N.D. N.D. N.D. -0.5
nitrogen source NAG (N) N.D. N.D. N.D. N.D. -0.5
temperature shift Temperature shift 30_to_21; with MOPS N.D. N.D. N.D. N.D. -0.4
temperature shift Temperature shift 10_to_30; with MOPS N.D. N.D. N.D. N.D. -0.4
carbon source Octanoic (C) N.D. N.D. N.D. N.D. -0.4
attachment on pdms attachment on PDMS; 2 hours N.D. N.D. N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.4
carbon source D-Glucose (C) N.D. N.D. N.D. N.D. -0.4
pH Growth at pH8 and (C) D-Glucose N.D. N.D. N.D. N.D. -0.4
nitrogen source D-2-Aminobutyric (N) N.D. N.D. N.D. N.D. -0.4
temperature shift Temperature shift 10_to_30 N.D. N.D. N.D. N.D. -0.3
carbon source D-Fructose (C) N.D. N.D. N.D. N.D. +0.3
nitrogen source DL-3-Aminoisobutyric (N) N.D. N.D. N.D. N.D. +0.4
phage P. putida South MOI 10 N.D. N.D. N.D. N.D. +0.4
carbon source Glutaric (C) N.D. N.D. N.D. N.D. +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. N.D. N.D. N.D. +0.4
phage P. putida compost MOI 0.1 N.D. N.D. N.D. N.D. +0.4
carbon source ferulate (C); with MOPS N.D. N.D. N.D. N.D. +0.4
carbon source Succinic Acid (C) N.D. N.D. N.D. N.D. +0.4
carbon source Valerolactone (C) N.D. N.D. N.D. N.D. +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. N.D. N.D. N.D. +0.4
nitrogen source Propandiamine (N) N.D. N.D. N.D. N.D. +0.4
nitrogen source Propandiamine (N) N.D. N.D. N.D. N.D. +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. N.D. N.D. N.D. +0.4
phage P. putida South MOI 0.1 N.D. N.D. N.D. N.D. +0.5
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. N.D. N.D. +0.5
carbon source Rhamnogalacturonan - from potato (C) N.D. N.D. N.D. N.D. +0.5
nitrogen source D-2-Aminobutyric (N) N.D. N.D. N.D. N.D. +0.6
phage P. putida Sci small MOI 0.1 N.D. N.D. N.D. N.D. +0.6
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. N.D. N.D. +0.8
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