Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5465	PP_1117	PP_5742	PP_1118	PP_1119
carbon source	D-Glucose (C)	-0.2	+0.1	-0.8	-0.2	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-1.1	+0.4	-0.2	-0.0	-0.3
pH	Valerolactone (C) pH 6.5	-0.7	+0.3	-0.6	-0.0	+0.1
nitrogen source	Propiolactam (N)	-1.0	+0.5	-0.1	+0.0	-0.0
nitrogen source	Propiolactam (N)	-0.9	+0.7	+0.1	+0.0	-0.3
nitrogen source	Hydantoin (N)	-0.8	+0.3	+0.3	+0.1	-0.1
nitrogen source	L-Phenylalanine (N)	-1.3	+0.2	+0.3	+0.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.1	+0.7	+0.2	-0.4
nitrogen source	6-aminocaproic (N)	-0.9	+0.3	+0.1	+0.1	+0.2
temperature shift	Temperature shift 30_to_21	-0.4	+0.6	+0.3	-0.0	-0.4
carbon source	ferulate (C); with MOPS	-0.8	-0.0	+0.7	-0.1	+0.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.7	+0.9	+0.2	-0.0	-0.3
carbon source	3-Hydroxydecanoic (C)	-0.7	+0.5	-0.0	-0.1	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.2	+0.7	-0.1	-0.5
nitrogen source	2,6-diaminopimelic (N)	-1.1	+0.8	+0.0	+0.1	+0.5
nitrogen source	nitrate (N)	-0.7	+0.2	+0.7	+0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3	+0.2	-0.7	+0.1	+0.5
nitrogen source	L-Methionine (N)	-0.6	+0.4	+0.2	+0.1	+0.4
carbon source	1,3-Hexanediol (C)	-0.5	+0.3	+0.3	+0.0	+0.6
nitrogen source	L-Methionine (N)	-0.4	+0.5	+0.0	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.6	+0.4	+0.0	+0.6
carbon source	2-Keto-D-gluconic hemicalcium salt (C)	+0.2	+0.3	+0.4	+0.2	+0.5
phage	PUT8 MOI 10	+0.5	+0.4	+0.3	+0.1	+0.4
phage	P. putida compost MOI 0.1	+0.5	+0.3	+0.5	+0.2	+0.3
phage	PUT8 MOI 10	+0.8	+0.1	+0.7	-0.0	+0.3
phage	P. putida Sci Big MOI 0.1	+1.0	+0.9	+0.1	+0.3	-0.5
phage	P. putida PUT 7 MOI 1	+1.1	+0.6	+0.9	+0.6	+0.0
phage	P. putida Missley MOI 0.1	+1.2	+0.9	+0.7	+0.6	+0.6
phage	P. putida Sci small MOI 0.1	+1.1	+0.8	+1.3	+0.3	+0.6
phage	P. putida Sci small MOI 0.1	+0.9	+0.9	+1.3	+0.6	+0.7