Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4225	PP_4226	PP_5664	PP_4227	PP_4228
stress	Growth with Chloride 200 mM	-0.3	-2.0	-0.3	-1.5	-0.7
carbon source	ferulate (C); with MOPS	-0.0	-1.9	-1.0	-1.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.4	+0.5	-3.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-0.0	+0.3	-2.5	+0.1
pH	Growth at pH8 and (C) Trisodium citrate	+0.2	-0.8	-0.4	-1.7	-0.1
nitrogen source	Urea (N); with MOPS	+0.3	-1.9	-0.2	-0.9	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.1	+0.1	-2.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.8	+0.2	-0.5	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.9	-0.7	+0.1	-0.1	-0.8
carbon source	L-Lysine (C)	-0.5	+0.3	-0.2	-1.8	-0.1
stress	Growth with Chloride 200 mM; with MOPS	-0.8	-0.3	+0.3	-1.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.3	+0.2	-1.3	+0.3
pH	Valerolactone (C) pH 6.5	-0.5	+0.1	+0.2	-2.0	+0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.2	-2.3	-0.1	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.8	+0.3	-1.8	+0.4
phage	P. putida PUT 7 MOI 1	-0.8	-0.6	+0.2	+0.4	-0.9
nitrogen source	D-2-Aminobutyric (N)	-0.9	+0.1	-1.0	+0.4	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.9	+0.4	+0.4	-3.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7	+0.4	+0.1	-0.9	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3	-0.7	-0.4	-1.1	+0.3
pH	pH 6	+0.8	+0.0	-0.2	-2.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	+0.1	+0.5	-1.8	-0.5
carbon source	L-Leucine (C)	+0.4	-1.4	-0.2	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.2	-0.2	+0.6	+0.5	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.3	-0.8	-0.4	+0.8	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	+0.2	+0.3	+0.5	+0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.8	-0.4	+0.0	+1.5	+0.0
phage	P. putida Sci small MOI 0.1	-0.3	+0.6	-0.4	+1.1	-0.5
carbon source	Tween 20 (C)	-0.1	-0.4	+0.3	+1.7	+0.2
carbon source	Hexanoic (C)	-0.5	+0.2	+0.0	+1.6	+0.4