Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4084	PP_4085	PP_5652	PP_5654	PP_4091
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2	-0.1	-5.1	-2.0	N.D.
carbon source	D-Glucose (C)	-0.1	-0.4	-6.6	-0.7	N.D.
nitrogen source	no extra (N); with MOPS	+0.2	-0.1	-3.5	-1.4	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4	+0.1	-2.7	-0.9	N.D.
carbon source	Delta-Nonalactone (C)	-0.2	-0.0	-1.2	-2.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.0	-3.2	+0.4	N.D.
nitrogen source	Propandiamine (N)	+0.2	-0.2	-3.0	-0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6	+0.1	-4.0	+0.4	N.D.
carbon source	ferulate (C); with MOPS	-0.5	+0.1	-2.3	-0.2	N.D.
nitrogen source	nitrogen source nitrate 5mM	+0.4	+0.1	-1.4	-1.9	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.0	-1.1	-1.4	N.D.
carbon source	carbon source Bisabolol 45 mM	-0.7	-0.2	-1.4	-0.5	N.D.
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-0.2	-1.8	-0.4	N.D.
pH	pH 5	-0.6	+0.1	-2.2	-0.1	N.D.
carbon source	Trisodium citrate 10 mM (C)	+0.1	-0.1	-2.7	-0.2	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3	+0.1	-4.0	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	-2.9	+0.3	N.D.
nitrogen source	D-2-Aminobutyric (N)	+0.2	-0.1	-1.4	-1.3	N.D.
nitrogen source	Propiolactam (N)	+0.3	-0.1	-1.0	-1.9	N.D.
nitrogen source	2,6-diaminopimelic (N)	+0.4	+0.2	-2.8	+0.0	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.6	-0.0	-2.2	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.2	-1.3	-0.8	N.D.
carbon source	L-Leucine (C)	+0.6	+0.0	-1.4	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.9	-1.4	N.D.
carbon source	Trisodium citrate (C)	+0.4	+0.1	-1.9	+0.7	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	-0.1	-1.5	+0.7	N.D.
pH	Valerolactone (C) pH 6.5	-0.5	-0.1	+1.8	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	+0.1	-0.6	+0.7	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-0.2	+0.7	+1.9	N.D.
phage	P. putida Missley MOI 0.1	-0.1	+0.3	+1.5	+1.2	N.D.