Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5618 and PP_5619 are separated by 368 nucleotidesPP_5619 and PP_5620 are separated by 379 nucleotidesPP_5620 and PP_3689 are separated by 483 nucleotidesPP_3689 and PP_3690 are separated by 541 nucleotides PP_5618: PP_5618 - putative Cro/CI transcriptional regulator, at 4,195,712 to 4,196,158 _5618 PP_5619: PP_5619 - protein of unknown function, at 4,196,527 to 4,196,769 _5619 PP_5620: PP_5620 - conserved protein of unknown function, at 4,197,149 to 4,197,682 _5620 PP_3689: PP_3689 - putative Serine/threonine protein phosphatase, at 4,198,166 to 4,199,173 _3689 PP_3690: PP_3690 - conserved protein of unknown function, at 4,199,715 to 4,201,037 _3690
Group Condition PP_5618 PP_5619 PP_5620 PP_3689 PP_3690
temperature shift Temperature shift 30_to_10; with MOPS +0.0 -2.1 -0.0 -0.2 +0.0
carbon source carbon source Bisabolol 45 mM -0.1 -1.0 -0.0 -0.4 -0.2
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.0 -1.2 -0.1 -0.4 -0.0
phage moi 100 Time6-phageFRS -0.1 -1.2 +0.1 +0.0 -0.2
carbon source D-Glucose (C) -0.0 -1.2 +0.3 +0.0 -0.1
carbon source ferulate (C); with MOPS -0.7 -0.1 +0.3 -0.3 -0.2
pH Growth at pH6 and (C) Trisodium citrate -0.2 -0.8 +0.4 -0.2 -0.1
carbon source D-Glucose (C); with MOPS -0.4 -0.7 +0.3 -0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.9 +0.2 -0.3 +0.5
nitrogen source Ammonium chloride (N) +0.2 -1.0 +0.4 -0.0 -0.3
pH Growth at pH7 and (C) D-Glucose +0.4 -2.0 +0.4 +0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 -1.6 +0.3 -0.1 +0.2
pH Growth at pH6 and (C) Trisodium citrate +0.0 -1.1 +0.5 -0.1 +0.1
temperature Growth at 30C -0.0 -1.1 +0.4 +0.1 +0.2
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.3 -0.9 +0.3 -0.1 +0.0
temperature shift Temperature shift 30_to_25; with MOPS +0.4 -1.0 +0.0 +0.2 +0.2
pH Growth at pH6 and (C) D-Glucose +0.3 -0.4 +0.7 -0.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 -1.1 +0.2 +0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.2 -0.8 +0.3 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.7 -0.5 -0.0 +0.2
nitrogen source no extra (N); with MOPS +0.1 -0.7 +0.7 +0.1 -0.2
phage PUT8 MOI 0.1 -0.5 +0.6 +0.0 -0.0 +0.6
phage PUT8 MOI 10 -0.2 +0.6 +0.2 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.8 +0.5 -0.0 -0.0
nitrogen source NAG (N); with MOPS +0.6 +0.5 +0.5 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +0.5 +0.5 +0.1 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +0.3 +0.9 +0.5 +0.1
phage P. putida Sci small MOI 0.1 +0.4 +0.5 +0.4 +0.5 +0.5
phage P. putida PUT 7 MOI 1 +0.7 +0.5 +0.9 +0.5 +0.7
phage P. putida Missley MOI 0.1 +1.2 -0.1 +1.0 +0.6 +0.9
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