Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5614	PP_5615	PP_5616	PP_5617	PP_3688
temperature	Growth at 25C	-0.3	-0.3	-0.4	-1.4	+0.1
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-0.2	-0.2	-1.0	-0.0
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.2	-0.6	-0.1	-0.8	-0.2
temperature	Growth at 25C	+0.0	-0.2	-0.1	-1.3	-0.3
carbon source	Trisodium citrate (C)	-0.3	-0.6	-0.7	-0.1	-0.2
carbon source	L-Leucine (C)	-0.3	-0.1	-0.6	-0.7	+0.0
pH	pH 4	-0.3	-0.4	-0.3	-0.3	-0.3
carbon source	Tween 20 (C)	+0.0	+0.0	-0.2	-1.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-1.1	+0.3	-0.5	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	-0.1	+0.3	-1.6	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	+0.1	-0.6	-0.7	-0.3
stress	R2A with Fusaric 240 ug/mL	+0.1	-0.2	-0.2	-0.3	-0.7
carbon source	butyrate (C)	-0.1	+0.1	-0.1	-1.1	-0.2
nitrogen source	nitrogen source nitrite 0.5mM	+0.1	+0.1	-0.2	-1.0	-0.2
pH	D-Glucose (C) pH 7	-0.1	-0.3	-0.2	-0.9	+0.2
nitrogen source	Hippuric (N)	+0.1	-0.3	-0.2	-0.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	-0.3	+0.4	-0.6	+0.2
carbon source	D-Glucose (C)	-0.1	-0.2	-0.3	+0.7	-0.6
pH	Growth at pH7 and (C) D-Glucose	-0.2	+0.8	-0.0	-0.3	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	-0.1	+0.3	+0.6	-0.4
temperature	Growth at 25C; with MOPS	-0.2	-0.2	-0.2	+0.9	-0.3
phage	P. putida Sci Big MOI 0.1	+0.1	+0.1	-0.8	+0.6	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.0	+0.2	-0.4	+0.8	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.2	+0.2	+0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.2	+0.3	+0.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.1	-0.1	+1.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	-0.1	+1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.6	-0.1	+0.3	+0.4
phage	P. putida Missley MOI 0.1	+0.4	+0.5	+0.4	+0.0	+0.5
phage	P. putida PUT 7 MOI 1	+0.5	+0.1	+0.6	+0.6	+0.9