Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3239 and PP_3240 are separated by 55 nucleotidesPP_3240 and PP_5592 are separated by 91 nucleotidesPP_5592 and PP_3241 are separated by 8 nucleotidesPP_3241 and PP_3242 are separated by 152 nucleotides PP_3239: PP_3239 - putative cointegrate resolution protein T Tn4652, at 3,674,787 to 3,675,773 _3239 PP_3240: PP_3240 - conserved protein of unknown function, at 3,675,829 to 3,675,993 _3240 PP_5592: PP_5592 - conserved protein of unknown function, at 3,676,085 to 3,676,336 _5592 PP_3241: PP_3241 - conserved exported protein of unknown function, at 3,676,345 to 3,676,845 _3241 PP_3242: PP_3242 - GGDEF domain protein, at 3,676,998 to 3,678,566 _3242
Group Condition PP_3239 PP_3240 PP_5592 PP_3241 PP_3242
phage PUT8 MOI 0.1 -1.8 N.D. -0.1 -5.7 -0.0
carbon source ferulate (C); with MOPS -0.1 N.D. -0.4 -5.4 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -6.5 N.D. -0.3 +0.9 +0.1
nitrogen source D-2-Aminobutyric (N) -2.1 N.D. -0.4 -3.4 +0.1
temperature shift Temperature shift 30_to_10; with MOPS +0.0 N.D. +0.0 -5.7 +0.2
carbon source D-Glucose (C); with MOPS +0.2 N.D. +0.1 -5.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.0 N.D. -0.3 -5.0 -0.1
pH Growth at pH6 and (C) Trisodium citrate +0.5 N.D. -0.3 -5.5 +0.1
phage PUT 8 MOI 1 +1.0 N.D. -0.1 -5.7 -0.3
pH Growth at pH9 and (C) Trisodium citrate -4.0 N.D. -0.6 -0.4 -0.1
phage P. putida Sci small MOI 0.1 +0.1 N.D. -0.4 -4.1 -0.3
pH Growth at pH7 and (C) Trisodium citrate -1.2 N.D. +0.1 -3.2 -0.3
nitrogen source 2,6-diaminopimelic (N) -0.5 N.D. -0.0 -3.9 -0.1
nitrogen source Urea (N); with MOPS -1.5 N.D. -0.3 -2.6 -0.1
carbon source D-Glucose (C) -0.3 N.D. -0.1 -3.3 -0.6
nitrogen source no extra (N); with MOPS -2.0 N.D. +0.2 -2.6 +0.2
pH D-Glucose (C) pH 6.5 -0.4 N.D. -0.2 -3.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 N.D. +0.2 -3.5 +0.0
pH Growth at pH6 and (C) D-Glucose -0.5 N.D. -0.3 -2.5 -0.0
temperature shift Temperature shift 30_to_21; with MOPS -2.0 N.D. -0.2 -1.3 +0.2
nitrogen source TNT (N) -0.7 N.D. -0.3 -2.0 -0.3
nitrogen source nitrate (N) -0.3 N.D. -0.5 -2.4 -0.1
pH pH 5 -0.5 N.D. +0.0 -2.7 -0.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.0 N.D. -0.1 -2.3 +0.3
nitrogen source Propiolactam (N) -0.8 N.D. +0.2 -2.2 -0.2
stress Growth with Chloride 200 mM; with MOPS -1.1 N.D. +0.2 -1.6 -0.4
carbon source ferulate (C); with MOPS -0.6 N.D. +0.3 -2.7 +0.1
temperature Growth at 30C; with MOPS -0.6 N.D. +0.2 -2.0 -0.5
stress R2A with Fusaric 240 ug/mL -0.7 N.D. +0.3 -2.2 +0.2
nitrogen source nitrogen source nitrite 0.5mM +1.0 N.D. -0.2 -3.0 -0.1
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