Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3105 and PP_3106 are separated by 25 nucleotidesPP_3106 and PP_5575 are separated by 10 nucleotidesPP_5575 and PP_3107 overlap by 20 nucleotidesPP_3107 and PP_3108 are separated by 6 nucleotides PP_3105: PP_3105 - conserved membrane protein of unknown function, at 3,507,652 to 3,508,347 _3105 PP_3106: PP_3106 - conserved protein of unknown function, at 3,508,373 to 3,510,229 _3106 PP_5575: PP_5575 - conserved protein of unknown function, at 3,510,240 to 3,510,824 _5575 PP_3107: PP_3107 - conserved protein of unknown function, at 3,510,805 to 3,511,326 _3107 PP_3108: PP_3108 - Rhs-related protein, at 3,511,333 to 3,515,490 _3108
Group Condition PP_3105 PP_3106 PP_5575 PP_3107 PP_3108
carbon source Myristic (C) -4.1 +0.2 -4.2 -0.6 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.9 -0.0 -2.3 -0.2 -0.4
r2a control with 0.2% methanol R2A control with 0.2% methanol -2.4 -0.0 -5.1 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.7 -0.2 -1.1 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -5.2 +0.0 -1.8 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -5.3 +0.0 -1.3 -0.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.4 -0.2 -0.7 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -5.7 -0.2 -0.2 -0.3 -0.2
carbon source D-Fructose (C) -5.7 +0.0 -0.8 +0.1 -0.1
nitrogen source nitrate (N) -6.6 +0.1 +0.3 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -5.2 -0.0 -0.2 -0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -5.6 +0.0 -0.1 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -5.2 -0.1 +0.0 -0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.4 -0.1 -0.1 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.4 +0.2 -0.1 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -4.9 +0.2 -1.1 +0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -4.8 -0.4 -0.7 +0.2 -0.1
carbon source Crotonic (C) -4.4 -0.0 -0.2 -0.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.9 +0.1 +0.7 -0.2 -0.2
pH Growth at pH6 and (C) Trisodium citrate -0.5 -0.2 -4.5 -0.2 +0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -5.7 +0.1 +0.3 +0.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.7 +0.3 +0.0 -0.4 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.5 -0.1 -0.6 +0.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -5.6 +0.0 +1.0 -0.4 -0.1
mixed community control Putida_ML5X alone -4.9 -0.0 +0.3 +0.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.7 +0.3 +0.3 -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.7 +0.0 +0.3 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.5 +0.1 +1.1 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -4.5 +0.4 +1.2 -0.2 -0.1
phage P. putida Sci Big MOI 0.1 -3.6 +0.6 +0.4 +0.4 +0.4
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