Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2820	PP_2821	PP_5539	PP_2823	PP_2824
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-5.5	-0.0	-0.3	-0.5	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-3.7	-0.6	+0.1	-0.7	+0.2
nitrogen source	D-2-Aminobutyric (N)	-3.2	-0.5	+0.0	-0.5	-0.1
nitrogen source	D-2-Aminobutyric (N)	-3.5	+0.1	-0.0	+0.3	-0.9
phage	P. putida Sci small MOI 0.1	-0.6	-1.9	-0.5	-0.5	-0.4
phage	PUT 8 MOI 1	-1.2	-1.3	-0.4	-0.0	-0.8
carbon source	1,3-Hexanediol (C)	-2.7	-0.1	+0.1	-0.5	-0.4
pH	Growth at pH7 and (C) D-Glucose	-2.4	-0.5	-0.1	-0.1	-0.3
carbon source	Vanillin (C)	-3.0	-0.1	+0.1	-0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-2.7	+0.1	+0.2	-0.2	-0.8
nitrogen source	spermidine (N)	-2.8	-0.3	-0.0	-0.1	-0.0
carbon source	3-methyl-1-butanol (C)	-2.8	-0.0	-0.0	-0.2	-0.2
carbon source	1,3-Hexanediol (C)	-2.4	-0.2	-0.0	-0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-3.1	+0.0	+0.0	+0.3	-0.2
temperature shift	Temperature shift 10_to_25; with MOPS	-2.7	-0.7	+0.0	+0.2	+0.2
carbon source	Vanillin (C)	-2.7	-0.0	+0.1	-0.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-2.2	+0.2	+0.2	-0.3	-0.8
carbon source	ferulate (C); with MOPS	-1.7	-0.2	+0.2	+0.1	-1.3
nitrogen source	nitrite (N)	-2.3	+0.1	-0.2	-0.5	+0.3
carbon source	Tween 20 (C)	-2.1	-0.8	-0.1	+0.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-3.4	-0.1	+0.1	+0.0	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-2.2	+0.4	+0.1	-0.1	-0.5
carbon source	L-Lysine (C)	-2.2	-0.3	-0.1	-0.0	+0.5
pH	pH 6	-2.6	+0.2	+0.0	-0.2	+0.7
temperature	Growth at 25C	-1.9	-0.6	-0.1	+0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.7	+0.3	+0.1	+0.0	+0.6
phage	P. putida Sci small MOI 0.1	+1.3	-0.8	-1.0	-0.5	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.7	-0.3	-0.3	+0.9	+0.6
nitrogen source	NAG (N); with MOPS	-1.8	-0.5	+0.3	+0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+1.5	+0.0	+1.6	+0.7