Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2511	PP_2512	PP_5535	PP_2513	PP_2514
nitrogen source	NAG (N); with MOPS	-1.0	-0.5	-1.1	-1.2	-0.4
phage	P. putida PUT 7 MOI 1	-4.5	-0.1	+0.3	-0.2	+0.7
carbon source	Valerolactone (C)	-1.9	-0.2	-0.7	-0.4	-0.3
phage	P. putida Sci small MOI 0.1	-5.3	+0.7	+0.6	+0.4	+0.1
carbon source	Trisodium citrate (C)	-1.3	-1.1	+0.2	-0.9	-0.1
pH	pH 9	-2.4	+0.0	+0.2	-0.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.4	-0.3	-0.6	-0.7
carbon source	Tween 20 (C)	-1.2	-0.4	-0.4	-0.6	+0.0
carbon source	D-Glucose (C); with MOPS	-0.8	-0.3	-0.5	-0.4	-0.5
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.7	-0.1	+0.2	-2.2	+0.3
pH	Valerolactone (C) pH 6.5	-0.3	+0.1	-0.4	-1.6	-0.1
carbon source	acetate (C)	-1.1	+0.2	-0.1	-1.3	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-2.2	+0.0	+0.2	+0.5	-0.7
carbon source	carbon source D-Glucose 55.5 mM	+0.6	-0.2	-0.8	-1.2	-0.3
temperature shift	Temperature shift 10_to_25; with MOPS	+0.1	-0.7	+0.2	-1.4	-0.1
temperature	Growth at 30C	-1.4	-0.3	+0.3	-0.6	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2	+0.4	-0.8	+0.1	-0.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.4	-0.3	+0.1	-1.5	+0.5
pH	Growth at pH6 and (C) D-Glucose	+0.1	-0.7	+0.5	-1.0	-0.3
pH	D-Glucose (C) pH 6.5	+0.0	+0.3	-0.2	-1.8	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	+0.3	-0.2	-1.1	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.1	+0.2	-0.0	+0.5	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.6	-0.5	+0.1	+0.3	-1.4
nitrogen source	D-2-Aminobutyric (N)	+1.2	-0.3	-0.8	-1.4	+0.9
pH	pH 7	+0.5	+0.3	-0.1	-1.4	+0.3
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x	+0.9	+0.0	-0.6	-0.4	+0.6
nitrogen source	D-2-Aminobutyric (N)	+1.6	-0.3	+0.5	-0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.5	+0.5	-0.0	+1.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+1.4	+0.6	+0.3	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.4	-0.1	+1.5	+1.6