Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5490	PP_1936	PP_5491	PP_5492	PP_1937
temperature	Growth at 30C; with MOPS	-0.1	-0.2	-3.5	-0.9	-0.1
nitrogen source	NAG (N); with MOPS	-0.8	-0.2	-2.3	+0.2	+0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.0	+0.2	-2.7	+0.0	-0.2
nitrogen source	Urea (N); with MOPS	-0.4	-0.4	-1.6	-0.3	+0.2
temperature shift	Temperature shift 10_to_30; with MOPS	-1.3	-0.3	-0.8	-0.1	+0.1
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.1	+0.1	-2.4	-0.0	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	+0.1	-2.2	-0.1	+0.0
pH	Growth at pH7 and (C) D-Glucose	-0.7	+0.2	-0.9	-0.7	+0.1
pH	pH 6	+0.2	+0.2	-1.9	-0.2	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.5	-1.6	+0.1	+0.1
nitrogen source	Urea (N)	+0.4	-0.3	-1.1	-0.6	-0.0
pH	pH 4	-0.3	+0.4	-1.2	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-0.0	-1.2	+0.7	-0.0
nitrogen source	no extra (N); with MOPS	+0.2	+0.2	-1.7	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	-1.4	+0.5	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	-0.6	+0.8	-0.9	-0.1
pH	pH 7	+0.5	+0.5	-1.1	-0.1	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3	+0.4	+0.5	-0.8	+0.1
pH	Growth at pH7 and (C) D-Glucose	-0.5	-0.0	+1.4	+0.2	+0.0
phage	PUT8 MOI 10	+0.7	+0.4	+0.7	-0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	-0.1	+0.8	+0.2	-0.0
phage	PUT8 MOI 10	+0.2	+0.2	+1.3	-0.1	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.2	+0.3	+0.8	+0.5	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6	+0.0	+1.8	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.8	+0.8	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	+0.2	+1.0	+0.6	+0.0
phage	P. putida Sci small MOI 0.1	+1.0	+0.3	+0.2	+0.1	+0.6
phage	P. putida Missley MOI 0.1	+0.7	+0.6	+0.5	+0.5	+0.9
phage	P. putida PUT 7 MOI 1	+0.5	+0.6	+0.5	+0.6	+1.0
phage	P. putida Sci small MOI 0.1	+0.6	+0.5	+1.6	+0.6	+0.5