Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1410	PP_1411	PP_5470	PP_1412	PP_1413
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-5.6	-0.0	+0.2	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-5.2	+0.3	-0.0	-0.2	-0.3
nitrogen source	NAG (N); with MOPS	-4.3	-0.1	+0.3	-0.9	+0.1
temperature shift	Temperature shift 30_to_34; with MOPS	-4.3	-0.0	+0.0	-0.3	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-4.3	+0.1	+0.0	-0.4	+0.2
nitrogen source	Propandiamine (N)	-4.3	+0.1	+0.0	-0.1	+0.1
pH	Growth at pH6 and (C) D-Glucose	-4.4	-0.1	+0.1	+0.1	+0.2
phage	P. putida Sci small MOI 0.1	-3.7	+0.2	+0.1	+0.2	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-3.4	+0.0	-0.1	-0.3	-0.0
phage	P. putida Missley MOI 0.1	-3.1	-0.0	-0.1	+0.1	-0.6
carbon source	ferulate (C); with MOPS	-4.0	+0.2	+0.0	-0.2	+0.4
nitrogen source	2,6-diaminopimelic (N)	-3.3	-0.1	+0.4	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.8	-0.2	-0.0	-0.1	-0.2
pH	Growth at pH7 and (C) Trisodium citrate	-2.7	-0.3	+0.1	-0.4	+0.2
pH	Growth at pH8 and (C) Trisodium citrate	-2.8	+0.0	+0.0	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.6	+0.1	-0.2	+0.1	-0.1
phage	P. putida Sci Big MOI 0.1	-2.8	+0.0	+0.4	-0.2	+0.1
micoeukaryotes	C.elegans, mixed culture-2	-2.4	-0.1	+0.3	+0.1	-0.0
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-1.8	-0.4	+0.3	+0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5	-0.1	+0.1	-0.6	+0.9
pH	pH 6	-1.5	+0.1	+0.4	+0.4	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.1	+0.1	+1.2	+0.6	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.1	+1.3	+0.4	-0.3
stress	R2A with Fusaric 240 ug/mL	+2.0	-0.2	-0.1	-0.5	+0.3
no stress control	Growth with no stress	+2.2	-0.3	+0.1	-0.2	-0.1
carbon source	D-Glucose (C)	+1.7	+0.2	+0.1	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	-0.0	+0.2	-0.4	+0.8
temperature shift	Temperature shift 30_to_25	+2.2	+0.0	-0.0	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.9	+0.2	+0.1	+0.1	-0.2
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+3.4	-0.1	+0.0	-0.0	-0.1