Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5464	PP_1116	PP_5465	PP_1117	PP_5742
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	-1.7	-0.2	+0.2	+0.1
nitrogen source	2,6-diaminopimelic (N)	-0.0	-0.9	-1.1	+0.8	+0.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.1	-0.2	-1.1	+0.4	-0.2
pH	Valerolactone (C) pH 6.5	+0.3	-0.1	-0.7	+0.3	-0.6
nitrogen source	L-Phenylalanine (N)	+0.0	+0.2	-1.3	+0.2	+0.3
nitrogen source	nitrate (N)	+0.2	-0.7	-0.4	+0.3	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3	-1.0	-0.3	+0.6	+0.1
nitrogen source	Propiolactam (N)	+0.4	+0.0	-1.0	+0.5	-0.1
pH	Valerolactone (C) pH 6.5	-0.0	+0.6	-0.7	+0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	+0.5	+0.2	+0.2	-0.6
carbon source	L-Lysine (C)	+0.3	+0.7	-0.3	-0.2	-0.4
nitrogen source	Propiolactam (N)	+0.2	-0.0	-0.9	+0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.4	-0.5	+0.6	+0.4
nitrogen source	nitrate (N)	+0.1	+0.1	-0.7	+0.2	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	-0.1	-0.5	-0.1	+0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.6	-0.2	+0.5	+0.1	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.3	+0.1	-0.7	+0.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.6	+0.9	+0.2	+0.0
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.3	+0.3	-0.4	+0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.8	+0.4	-0.1	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.4	+0.8	+0.5	-0.1	+0.2
phage	PUT8 MOI 10	+0.2	+0.5	+0.5	+0.4	+0.3
phage	P. putida compost MOI 0.1	+0.4	+0.2	+0.5	+0.3	+0.5
phage	PUT8 MOI 0.1	+0.3	+0.5	+0.4	+0.2	+0.6
phage	PUT8 MOI 10	+0.3	+0.6	+0.8	+0.1	+0.7
phage	P. putida Sci Big MOI 0.1	+0.4	+0.3	+1.0	+0.9	+0.1
phage	P. putida Missley MOI 0.1	+0.6	+0.7	+1.2	+0.9	+0.7
phage	P. putida PUT 7 MOI 1	+0.8	+0.7	+1.1	+0.6	+0.9
phage	P. putida Sci small MOI 0.1	+0.9	+0.2	+0.9	+0.9	+1.3
phage	P. putida Sci small MOI 0.1	+0.9	+0.7	+1.1	+0.8	+1.3