Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0654	PP_0655	PP_5454	PP_0656	PP_0657
phage	P. putida Sci small MOI 0.1	-0.2	-0.4	-0.4	-0.4	-1.1
phage	P. putida PUT 7 MOI 1	-0.1	-0.4	+0.0	-0.9	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	-0.9	-0.1	-0.7	+0.2
stress	Growth with Chloride 500 mM	-0.2	+0.1	-0.0	-0.9	-0.3
phage	P. putida Sci small MOI 0.1	+0.1	+0.2	-0.9	-0.5	-0.0
nitrogen source	NAG (N); with MOPS	-0.6	-0.5	-0.7	+0.5	+0.2
temperature	Growth at 25C	-0.2	-0.5	-0.1	-0.5	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.0	-0.6	-0.1	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.3	-0.1	-0.4	-0.5
nitrogen source	nitrite (N)	+0.0	+0.2	+0.3	-1.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	+0.2	+0.1	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	+0.1	-0.2	-0.8
carbon source	ferulate (C); with MOPS	-0.3	+0.2	-0.3	+0.5	-0.5
carbon source	2,3-Butanediol (C)	+0.4	+0.2	-0.3	-0.5	-0.2
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.8	+0.1	+0.2	+0.4
carbon source	acetate (C)	+0.4	-0.5	+0.2	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.7	-0.1	+0.1	-0.3
carbon source	D-Glucose (C); with MOPS	-0.0	+0.7	+0.3	-0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	-0.2	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.5	-0.1	-0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.2	+0.1	-0.6	+0.4
temperature shift	Temperature shift 30_to_34; with MOPS	+0.3	-0.1	+0.1	-0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.3	+0.2	-0.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.6	-0.1	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.6	-0.2	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.5	+0.2	+0.4
nitrogen source	nitrate (N)	+0.2	+0.4	+0.3	-0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.6	+0.3	-0.5	+0.8
nitrogen source	D-2-Aminobutyric (N)	-0.1	+0.6	+0.3	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.1	+0.3	-0.0	+0.7