Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0384 and PP_0385 are separated by 187 nucleotidesPP_0385 and PP_5445 are separated by 343 nucleotidesPP_5445 and PP_t71 are separated by 52 nucleotidesPP_t71 and PP_0386 are separated by 16 nucleotides PP_0384: PP_0384 - Transcriptional regulator, AsnC family, at 465,350 to 465,811 _0384 PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 PP_5445: PP_5445 - conserved protein of unknown function, at 466,897 to 467,067 _5445 PP_t71: PP_t71 - tRNA-Met, at 467,120 to 467,196 _t71 PP_0386: PP_0386 - Sensory box protein, at 467,213 to 470,956 _0386
Group Condition PP_0384 PP_0385 PP_5445 PP_t71 PP_0386
carbon source L-Lysine (C) -5.1 +0.0 -0.5 N.D. +0.2
carbon source L-Lysine (C) -5.7 +0.1 +0.3 N.D. +0.3
nitrogen source L-Lysine (N) -3.3 +0.1 -0.4 N.D. +0.0
carbon source L-Lysine (C) -3.0 -0.2 -0.5 N.D. +0.2
carbon source L-Lysine 10 mM (C) -2.5 -0.2 -0.6 N.D. +0.1
nitrogen source L-Lysine (N) -3.0 +0.1 -0.3 N.D. +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.2 -0.3 -2.3 N.D. +0.0
carbon source ferulate (C); with MOPS +0.2 +0.3 -3.2 N.D. +0.0
carbon source 3-Hydroxydecanoic (C) -0.0 -0.2 -2.3 N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.5 -1.2 N.D. -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.2 -0.1 -1.7 N.D. -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 +0.3 -2.1 N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.2 -1.4 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 +0.4 -0.7 N.D. -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 +0.4 -1.4 N.D. -0.3
carbon source L-Leucine (C) +0.3 -0.1 -1.8 N.D. +0.4
carbon source L-Leucine (C) +0.2 +0.2 -1.6 N.D. +0.2
phage P. put PUT 10 MOI 1 +0.2 +0.3 -1.7 N.D. +0.2
carbon source ferulate (C); with MOPS +0.3 -1.3 +0.4 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.7 +1.3 N.D. -0.1
pH pH 9 +0.2 +1.0 -0.9 N.D. +0.1
pH Valerolactone (C) pH 6.5 +0.5 -0.6 +0.9 N.D. -0.3
pH Growth at pH7 and (C) Trisodium citrate +0.2 -0.3 +1.2 N.D. -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-1 +1.2 -0.1 -0.3 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.3 +1.5 N.D. +0.1
nitrogen source NAG (N); with MOPS +0.8 +0.3 +1.0 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 -0.1 +1.6 N.D. +0.1
nitrogen source NAG (N); with MOPS +0.1 +0.7 +1.1 N.D. +0.3
carbon source carbon source 4-vinylphenol 0.01 mM +0.5 +1.1 +0.8 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +1.1 +2.5 N.D. +0.3
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