Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5438 and PP_0284 are separated by 377 nucleotidesPP_0284 and PP_5439 are separated by 131 nucleotidesPP_5439 and PP_5440 are separated by 239 nucleotidesPP_5440 and PP_t72 are separated by 188 nucleotides PP_5438: PP_5438 - conserved protein of unknown function, at 340,930 to 341,106 _5438 PP_0284: PP_0284 - gamma-aminobutyrate permease, at 341,484 to 342,869 _0284 PP_5439: PP_5439 - conserved protein of unknown function, at 343,001 to 343,444 _5439 PP_5440: PP_5440 - conserved protein of unknown function, at 343,684 to 343,911 _5440 PP_t72: PP_t72 - tRNA-Phe, at 344,100 to 344,175 _t72
Group Condition PP_5438 PP_0284 PP_5439 PP_5440 PP_t72
phage P. putida South MOI 0.1 N.D. +0.0 -3.6 -0.3 N.D.
phage P. putida South MOI 0.1 N.D. -0.0 -2.2 -0.5 N.D.
phage P. putida South MOI 1 N.D. +0.1 -2.1 -0.5 N.D.
phage P. put PUT 10 MOI 10 N.D. +0.1 -1.9 -0.6 N.D.
phage P. putida PUT10 MOI 0.1 N.D. +0.0 -1.9 -0.4 N.D.
phage P. put PUT 10 MOI 1 N.D. -0.1 -1.6 -0.4 N.D.
phage P. putida PUT10 MOI 10 N.D. -0.1 -1.5 -0.5 N.D.
phage PUT 8 MOI 1 N.D. +0.2 -1.5 -0.8 N.D.
phage P. putida PUT10 MOI 10 N.D. +0.0 -1.6 -0.4 N.D.
phage P. put PUT 10 MOI 1 N.D. +0.0 -1.5 -0.4 N.D.
phage P. put South MOI 0.1 N.D. +0.0 -1.4 -0.5 N.D.
phage P. putida PUT10 MOI 1 N.D. +0.1 -1.6 -0.3 N.D.
phage P. put PUT 10 MOI 0.1 N.D. +0.0 -1.4 -0.5 N.D.
phage P. put South MOI 1 N.D. +0.2 -1.5 -0.5 N.D.
phage P. putida PUT10 MOI 1 N.D. +0.1 -1.6 -0.3 N.D.
phage P. put South MOI 1 N.D. +0.1 -1.7 -0.2 N.D.
phage PUT8 MOI 0.1 N.D. -0.2 -1.0 -0.6 N.D.
phage PUT8 MOI 0.1 N.D. +0.2 -1.3 -0.6 N.D.
phage P. put PUT 10 MOI 10 N.D. -0.0 -0.7 -0.9 N.D.
phage P. put South MOI 0.1 N.D. +0.0 -1.5 -0.1 N.D.
carbon source ferulate (C); with MOPS N.D. -0.0 -0.4 -1.1 N.D.
phage P. putida PUT10 MOI 0.1 N.D. +0.1 -1.2 -0.4 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -0.3 -1.3 +0.2 N.D.
phage P. put PUT 10 MOI 0.1 N.D. +0.0 -1.6 +0.1 N.D.
carbon source Trisodium citrate (C) N.D. +0.2 -1.3 -0.3 N.D.
phage P. putida South MOI 10 N.D. +0.1 -1.4 +0.6 N.D.
carbon source ferulate (C); with MOPS N.D. +0.1 -1.2 +0.6 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.8 +1.0 N.D.
nitrogen source D-2-Aminobutyric (N) N.D. +0.2 +0.8 -0.6 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM N.D. +0.1 +0.5 +1.2 N.D.
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