Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5410 and PP_5411 are separated by 189 nucleotidesPP_5411 and PP_5412 are separated by 118 nucleotidesPP_5412 and PP_5413 are separated by 43 nucleotidesPP_5413 and PP_5414 are separated by 27 nucleotides PP_5410: PP_5410 - Transcriptional regulator, DeoR family, at 6,172,305 to 6,173,081 _5410 PP_5411: PP_5411 - N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase, at 6,173,271 to 6,174,638 _5411 PP_5412: PP_5412 - ATP synthase epsilon chain, at 6,174,757 to 6,175,176 _5412 PP_5413: PP_5413 - ATP synthase subunit beta, at 6,175,220 to 6,176,596 _5413 PP_5414: PP_5414 - ATP synthase gamma chain, at 6,176,624 to 6,177,484 _5414
Group Condition PP_5410 PP_5411 PP_5412 PP_5413 PP_5414
temperature shift Temperature shift 10_to_30 -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 N.D. N.D. N.D. N.D.
phage PUT 8 MOI 1 -0.6 N.D. N.D. N.D. N.D.
nitrogen source Urea (N) -0.6 N.D. N.D. N.D. N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.6 N.D. N.D. N.D. N.D.
carbon source Valeric (C) -0.6 N.D. N.D. N.D. N.D.
nitrogen source D-2-Aminobutyric (N) -0.6 N.D. N.D. N.D. N.D.
carbon source D-Mannose (C) -0.5 N.D. N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose -0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 N.D. N.D. N.D. N.D.
carbon source Nonanoic (C) -0.5 N.D. N.D. N.D. N.D.
nitrogen source Ammonium chloride and TNT (N) -0.5 N.D. N.D. N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 N.D. N.D. N.D. N.D.
nitrogen source TNT (N) -0.5 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 N.D. N.D. N.D. N.D.
carbon source ferulate (C); with MOPS -0.4 N.D. N.D. N.D. N.D.
pH D-Glucose (C) pH 7.5 -0.4 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 N.D. N.D. N.D. N.D.
phage P. putida Sci Big MOI 0.1 -0.4 N.D. N.D. N.D. N.D.
pH Growth at pH7 and (C) D-Glucose -0.4 N.D. N.D. N.D. N.D.
carbon source ferulate (C); with MOPS +0.4 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 N.D. N.D. N.D. N.D.
carbon source L-Lysine (C) +0.5 N.D. N.D. N.D. N.D.
phage P. putida PUT 7 MOI 1 +0.5 N.D. N.D. N.D. N.D.
pH Growth at pH7 and (C) Trisodium citrate +0.5 N.D. N.D. N.D. N.D.
stress Growth with Chloride 500 mM +0.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. N.D. N.D. N.D.
phage P. putida Missley MOI 0.1 +0.6 N.D. N.D. N.D. N.D.
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