Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5403	PP_5404	PP_5405	PP_5406	PP_5407
carbon source	D-Glucose (C)	-0.2	-0.4	-0.4	-0.2	-0.3
no stress control	Growth with no stress	-0.2	-0.2	-0.3	-0.2	-0.6
no stress control	Growth with no stress	-0.7	+0.1	-0.1	-0.2	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.2	+0.1	-0.0	-0.2	-1.1
carbon source	Tween 20 (C)	-0.4	-0.1	-0.1	-0.1	-0.5
carbon source	Octanoic (C)	-0.4	-0.2	-0.2	-0.1	-0.5
carbon source	acetate (C)	-0.4	-0.0	-0.3	-0.4	-0.2
carbon source	Octanoic (C)	-0.4	-0.1	-0.0	-0.2	-0.5
carbon source	4-Methyl-2-oxopentanoic (C)	-0.0	-0.2	-0.3	-0.4	-0.3
carbon source	Nonanoic (C)	-0.3	+0.1	-0.1	-0.4	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.1	-0.1	-0.4	+0.2	-0.5
carbon source	ferulate (C); with MOPS	+0.4	+0.0	+0.1	-0.4	-0.6
carbon source	ferulate (C); with MOPS	-0.6	+0.3	-0.1	+0.1	-0.2
nitrogen source	NAG (N); with MOPS	-0.5	-0.2	-0.3	+0.1	+0.4
pH	pH 6	+0.1	-0.2	+0.1	+0.2	-0.6
pH	Growth at pH7 and (C) D-Glucose	+0.2	-0.1	-0.3	-0.5	+0.2
pH	pH 5	-0.0	-0.2	+0.2	+0.2	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.3	+0.1	+0.2	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.0	-0.0	+0.5	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	+0.1	+0.2	+0.4	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4	+0.0	+0.3	+0.5	+0.1
nitrogen source	L-Methionine (N)	+0.3	+0.2	+0.2	+0.2	+0.3
phage	P. putida Sci Big MOI 0.1	+0.3	+0.2	+0.2	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	+0.2	+0.7	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7	+0.3	+0.3	+0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.3	+0.3	+0.2	+0.6
phage	P. putida Sci small MOI 0.1	+0.5	+0.3	+0.1	+0.2	+0.6
phage	P. putida Sci small MOI 0.1	+0.4	+0.5	+0.3	+0.1	+0.5
phage	P. putida PUT 7 MOI 1	+0.7	+0.6	+0.7	+0.7	+0.2
phage	P. putida Missley MOI 0.1	+0.6	+0.5	+0.9	+0.9	+0.9