Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5382	PP_5383	PP_5384	PP_5733	PP_5385
carbon source	D-Glucose (C)	-0.1	+0.2	-0.0	-0.9	-1.2
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.3	-0.2	-0.4	-0.7	-0.0
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.8	-0.9	+0.1	+0.0	-0.1
pH	pH 7	-0.6	-0.5	-0.2	-0.5	+0.1
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.1	+0.2	-0.0	-1.4
carbon source	carbon source D-Glucose 55.5 mM	-0.7	-0.0	-0.2	-0.7	-0.1
carbon source	D-Glucose (C)	-0.3	-0.2	-0.1	-0.4	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	-1.0	+0.1	-0.0	-0.2	-0.5
pH	Growth at pH6 and (C) D-Glucose	-1.1	+0.2	-0.1	+0.0	-0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.7	-0.2	+0.1	+0.1	-0.8
carbon source	L-Leucine (C)	+0.1	-0.5	-0.1	-0.3	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	-0.7	-0.1	-0.1	-0.7
pH	pH 4	-0.5	+0.2	-0.1	-0.3	-0.6
pH	pH 6	-1.2	+0.3	-0.1	-0.3	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.3	+0.2	-0.1	-0.6
carbon source	Valeric (C)	+0.4	-0.8	-0.0	+0.0	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.3	+0.3	-0.3	-0.5	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4	-0.3	-0.1	+0.2	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.1	-0.4	+0.2	+0.3	-0.7
carbon source	D-Glucose (C)	+0.7	-0.3	-0.0	+0.0	-0.6
nitrogen source	2,6-diaminopimelic (N)	+0.7	-0.3	+0.2	-0.7	+0.0
stress	Growth with Chloride 500 mM; with MOPS	-0.7	+0.1	-0.0	+0.4	+0.3
carbon source	ferulate (C); with MOPS	-0.0	-0.7	+0.2	+0.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.2	-0.2	+0.6	+0.4
nitrogen source	NAG (N); with MOPS	+0.7	-1.4	+0.2	+0.7	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+1.1	+0.2	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	+0.2	+0.2	+0.8
nitrogen source	nitrogen source nitrite 0.5mM	+0.2	+0.3	-0.1	+0.5	+0.4
phage	P. putida Missley MOI 0.1	+0.7	+0.2	+0.4	+0.3	+0.3
phage	P. putida PUT 7 MOI 1	+0.7	+0.1	+0.4	+0.3	+0.4