Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5377 and PP_5378 overlap by 11 nucleotidesPP_5378 and PP_5379 are separated by 9 nucleotidesPP_5379 and PP_5732 overlap by 11 nucleotidesPP_5732 and PP_5380 are separated by 14 nucleotides PP_5377: PP_5377 - conserved hypothetical protein, at 6,129,205 to 6,129,660 _5377 PP_5378: PP_5378 - putative metal-binding protein, at 6,129,650 to 6,130,432 _5378 PP_5379: PP_5379 - copper resistance protein B, at 6,130,442 to 6,131,521 _5379 PP_5732: PP_5732 - putative metal-binding protein, at 6,131,511 to 6,131,828 _5732 PP_5380: PP_5380 - copper resistance protein A, at 6,131,843 to 6,133,852 _5380
Group Condition PP_5377 PP_5378 PP_5379 PP_5732 PP_5380
nitrogen source Ammonium chloride and TNT (N) -0.0 -0.3 -0.6 -0.7 -1.2
nitrogen source Ammonium chloride and TNT (N) +0.0 -0.2 -0.8 -0.5 -1.1
nitrogen source Ammonium chloride and TNT (N) -0.1 -0.2 -0.6 -0.4 -1.1
nitrogen source Ammonium chloride and TNT (N) +0.1 -0.2 -0.8 -0.3 -1.0
nitrogen source TNT (N) -0.1 -0.2 -0.4 -0.5 -0.7
nitrogen source TNT (N) -0.1 -0.2 -0.4 -0.3 -0.8
nitrogen source Ammonium chloride (N) -0.1 -0.2 -0.4 -0.4 -0.6
nitrogen source Ammonium chloride (N) +0.2 -0.2 -0.3 -0.6 -0.6
nitrogen source Ammonium chloride (N) -0.1 -0.3 -0.2 -0.4 -0.6
nitrogen source TNT (N) -0.1 -0.1 -0.3 -0.1 -0.8
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.7 -0.2 +0.1 -0.4 -0.1
nitrogen source TNT (N) +0.1 -0.1 -0.4 -0.1 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.2 +0.3 -0.6 -0.2
carbon source carbon source D-Glucose 55.5 mM -0.8 +0.2 +0.1 -0.6 -0.0
pH Growth at pH6 and (C) D-Glucose +0.2 +0.2 -0.3 -1.1 -0.1
carbon source 3-Hydroxydecanoic (C) +0.4 -0.2 -0.1 -0.8 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 +0.1 -0.3 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.2 +0.2 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 +0.5 -0.0 -0.2 -0.0
pH pH 7 +0.4 +0.2 -0.2 -0.6 -0.1
nitrogen source Propiolactam (N) +0.5 +0.1 -0.5 +0.2 -0.1
nitrogen source 2,6-diaminopimelic (N) +0.6 +0.1 +0.1 -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.0 -0.1 +1.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +0.5 -0.1 -0.2 +0.3
carbon source Delta-Decalactone (C) -0.2 +0.2 -0.1 +0.4 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +0.2 -0.1 +0.4 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +0.2 -0.1 +0.4 +0.3
phage P. putida Missley MOI 0.1 +0.4 +0.2 +0.4 +0.5 +0.5
phage P. putida PUT 7 MOI 1 +0.9 +0.2 +0.4 +0.3 +0.3
carbon source Delta-Nonalactone (C) -0.4 +0.1 +0.7 +0.4 +1.8
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