Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5350 and PP_5351 are separated by 88 nucleotidesPP_5351 and PP_5352 are separated by 214 nucleotidesPP_5352 and PP_5353 are separated by 132 nucleotidesPP_5353 and PP_5354 are separated by 113 nucleotides PP_5350: PP_5350 - Transcriptional regulator, RpiR family, at 6,098,222 to 6,099,088 _5350 PP_5351: PP_5351 - glucose-6-phosphate 1-dehydrogenase, at 6,099,177 to 6,100,634 _5351 PP_5352: PP_5352 - DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex, at 6,100,849 to 6,103,035 _5352 PP_5353: PP_5353 - conserved exported protein of unknown function, at 6,103,168 to 6,104,022 _5353 PP_5354: PP_5354 - conserved protein of unknown function, at 6,104,136 to 6,104,543 _5354
Group Condition PP_5350 PP_5351 PP_5352 PP_5353 PP_5354
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -0.1 -1.4 -1.6 -0.5
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -3.9 +0.1 -0.5 -0.1 -0.3
stress MOPS minimal media_Glucose20mM with Chloride 200 mM -3.5 -0.1 -0.6 -0.2 -0.2
stress Formaldehyde 0.03125 vol% -1.2 +0.1 -3.4 -0.3 +0.1
temperature shift Temperature shift 10_to_25; with MOPS -4.2 +0.0 +0.3 -0.6 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 -0.3 -0.9 -1.0 -0.2
stress Growth with Chloride 500 mM; with MOPS -3.2 -0.2 -0.4 -0.3 -0.3
carbon source Delta-Undecalactone (C) -2.7 -0.1 -0.7 -0.8 -0.0
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -4.0 -0.1 -0.5 +0.2 +0.1
stress Growth with Chloride 500 mM -3.6 -0.1 -0.2 -0.2 -0.2
pH D-Glucose (C) pH 6 -2.6 -0.1 -0.6 -0.8 -0.2
nitrogen source NAG (N); with MOPS -4.0 -0.1 -0.2 +0.3 -0.2
pH Growth at pH8 and (C) D-Glucose -4.2 -0.2 -0.1 +0.5 -0.1
pH D-Glucose (C) pH 6.5 -2.9 -0.1 -0.9 +0.2 -0.4
nitrogen source DL-2-Aminobutyric (N) -4.3 +0.5 -0.5 -0.2 +0.4
nitrogen source nitrite (N) -2.5 -0.4 -0.2 -0.3 -0.6
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -3.0 +0.1 -0.8 -0.0 -0.2
nitrogen source L-Leucine (N) -3.5 +0.1 -0.5 +0.0 +0.0
temperature shift Temperature shift 30_to_25; with MOPS -3.9 +0.1 +0.2 +0.2 -0.3
pH Growth at pH7 and (C) D-Glucose -3.4 -0.1 -0.6 +0.5 -0.1
temperature shift Temperature shift 30_to_25; with MOPS -3.9 -0.1 +0.0 +0.4 +0.0
carbon source D-Glucose (C) -2.3 -0.0 -1.1 -0.4 +0.3
carbon source 5-Aminovaleric 10 mM (C) -2.7 +0.3 -0.9 +0.1 -0.2
nitrogen source D-2-Aminobutyric (N) -3.2 +0.8 -0.1 -0.3 -0.6
nitrogen source DL-2-Aminobutyric (N) -3.8 +0.6 -0.4 -0.2 +0.5
temperature shift Temperature shift 30_to_25; with MOPS -3.2 -0.2 +0.1 +0.3 -0.2
nitrogen source Urea (N) -3.2 -0.5 -0.3 +0.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.1 +0.4 -0.5 +0.4 -0.2
nitrogen source D-2-Aminobutyric (N) -3.8 +1.0 +0.3 +0.4 +0.1
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +2.0 +0.3 +1.5 +0.8 -0.3
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