Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5730	PP_5350	PP_5351	PP_5352	PP_5353
stress	Formaldehyde 0.03125 vol%	-0.3	-1.2	+0.1	-3.4	-0.3
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.3	-4.0	-0.1	-0.5	+0.2
temperature shift	Temperature shift 10_to_25; with MOPS	-0.3	-4.2	+0.0	+0.3	-0.6
nitrogen source	DL-2-Aminobutyric (N)	-0.1	-4.3	+0.5	-0.5	-0.2
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-0.1	-3.5	-0.1	-0.6	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-2.2	-0.3	-0.9	-1.0
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	-0.2	-3.9	+0.1	-0.5	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-0.4	-3.2	-0.2	-0.4	-0.3
pH	Growth at pH8 and (C) D-Glucose	-0.5	-4.2	-0.2	-0.1	+0.5
carbon source	Delta-Undecalactone (C)	+0.2	-2.7	-0.1	-0.7	-0.8
stress	Growth with Chloride 500 mM	+0.2	-3.6	-0.1	-0.2	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	-1.8	-0.1	-1.4	-1.6
pH	D-Glucose (C) pH 6	+0.1	-2.6	-0.1	-0.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.4	-2.0	+0.1	-0.2	-0.4
nitrogen source	DL-2-Aminobutyric (N)	-0.0	-3.8	+0.6	-0.4	-0.2
temperature shift	Temperature shift 30_to_25; with MOPS	-0.3	-3.9	+0.1	+0.2	+0.2
nitrogen source	L-Leucine (N)	+0.1	-3.5	+0.1	-0.5	+0.0
nitrogen source	NAG (N); with MOPS	+0.4	-4.0	-0.1	-0.2	+0.3
temperature shift	Temperature shift 30_to_25; with MOPS	-0.0	-3.9	-0.1	+0.0	+0.4
pH	D-Glucose (C) pH 6.5	+0.2	-2.9	-0.1	-0.9	+0.2
temperature	Growth at 25C	-1.2	-2.6	+0.0	+0.4	-0.1
nitrogen source	Urea (N)	-0.2	-3.2	-0.5	-0.3	+0.8
pH	Growth at pH7 and (C) D-Glucose	+0.2	-3.4	-0.1	-0.6	+0.5
carbon source	5-Aminovaleric 10 mM (C)	+0.0	-2.7	+0.3	-0.9	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4	-3.1	+0.4	-0.5	+0.4
carbon source	D-Fructose (C)	+0.5	-3.0	-0.1	-0.5	-0.1
nitrogen source	D-2-Aminobutyric (N)	+0.2	-3.2	+0.8	-0.1	-0.3
nitrogen source	D-2-Aminobutyric (N)	+0.3	-3.8	+1.0	+0.3	+0.4
phage	PUT 8 MOI 1	-0.8	+2.0	-0.0	-1.0	-0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.3	+2.0	+0.3	+1.5	+0.8