Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5338 and PP_5339 are separated by 151 nucleotidesPP_5339 and PP_5340 are separated by 229 nucleotidesPP_5340 and PP_5341 overlap by 1 nucleotidesPP_5341 and PP_5342 are separated by 31 nucleotides PP_5338: PP_5338 - aspartate ammonia-lyase, at 6,084,891 to 6,086,327 _5338 PP_5339: PP_5339 - transcriptional regulator, ornithine utilization, at 6,086,479 to 6,087,549 _5339 PP_5340: PP_5340 - Acetylpolyamine aminohydrolase, at 6,087,779 to 6,088,822 _5340 PP_5341: PP_5341 - putrescine-binding periplasmic protein, at 6,088,822 to 6,089,925 _5341 PP_5342: PP_5342 - Transcriptional regulator, GntR family, at 6,089,957 to 6,091,486 _5342
Group Condition PP_5338 PP_5339 PP_5340 PP_5341 PP_5342
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.2 -0.9 -0.1 +0.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -3.7 -0.3 +0.1 +0.0 -0.2
carbon source D-Lysine 10 mM (C) -2.9 -0.8 -0.3 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -4.3 +0.5 -0.1 +0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -4.1 +0.7 -0.0 +0.0 -0.1
lb outgrowth control more dilute start LB outgrowth control more dilute start -3.7 +0.0 +0.1 -0.0 -0.1
phage P. putida Sci Big MOI 0.1 -2.3 -0.6 -0.4 -0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.0 -0.1 -0.1 -0.2 +0.0
nophagecontrol TIme6-nophage -3.3 -0.2 +0.1 +0.0 -0.0
carbon source L-Lysine (C) -3.5 +0.3 -0.0 -0.1 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.4 +0.1 -0.1 +0.1 -0.0
carbon source Delta-Undecalactone (C) -3.3 +0.1 -0.0 +0.1 -0.0
carbon source L-Histidine (C) -3.2 +0.3 -0.1 -0.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.7 -0.2 -0.1 -0.0 -0.1
carbon source L-Lysine (C) -2.8 -0.1 +0.0 -0.1 -0.1
carbon source L-Glutamine (C) -3.0 -0.1 -0.0 +0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.5 -0.4 -0.2 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.9 +0.6 -0.1 +0.2 +0.1
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -3.5 +0.1 +0.3 -0.0 +0.0
phagefrs Time6-FRS -3.2 +0.1 +0.2 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.9 +0.2 -0.3 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.9 -1.1 +0.1 +0.0 +0.1
pH Growth at pH7 and (C) Trisodium citrate -2.2 -0.8 +0.2 +0.1 -0.1
nophagecontrol TIme6-nophage -3.2 +0.3 +0.2 +0.1 +0.0
nophagecontrol TIme6-nophage -2.9 +0.0 +0.1 +0.0 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.5 -0.3 +0.1 +0.1 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.7 +0.2 +0.1 +0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.2 +0.6 -0.1 -0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.9 +1.3 +0.1 +0.1 +0.2
nitrogen source NAG (N); with MOPS +2.0 -1.2 +0.2 -0.0 +0.1
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