Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_5335 and PP_5336 are separated by 10 nucleotidesPP_5336 and PP_5337 are separated by 267 nucleotidesPP_5337 and PP_5338 are separated by 170 nucleotidesPP_5338 and PP_5339 are separated by 151 nucleotides PP_5335: PP_5335 - N5-carboxyaminoimidazole ribonucleotide synthase, at 6,081,951 to 6,083,033 _5335 PP_5336: PP_5336 - N5-carboxyaminoimidazole ribonucleotide mutase, at 6,083,044 to 6,083,535 _5336 PP_5337: PP_5337 - LysR family transcriptional regulator, at 6,083,803 to 6,084,720 _5337 PP_5338: PP_5338 - aspartate ammonia-lyase, at 6,084,891 to 6,086,327 _5338 PP_5339: PP_5339 - transcriptional regulator, ornithine utilization, at 6,086,479 to 6,087,549 _5339
Group Condition PP_5335 PP_5336 PP_5337 PP_5338 PP_5339
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -4.0 -3.9 +0.6
carbon source L-Histidine (C) N.D. N.D. -4.0 -3.2 +0.3
phagefrs Time6-FRS N.D. N.D. -3.7 -3.2 +0.1
carbon source L-Lysine (C) N.D. N.D. -3.6 -3.5 +0.3
nophagecontrol TIme6-nophage N.D. N.D. -3.3 -3.3 -0.2
phage FRSphage N.D. N.D. -3.4 -3.3 +0.1
phagefrs Time6-FRS N.D. N.D. -3.9 -2.5 -0.1
nophagecontrol TIme6-nophage N.D. N.D. -3.6 -3.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -2.9 -4.1 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -2.5 -4.3 +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -3.0 -3.4 +0.1
nophagecontrol TIme6-nophage N.D. N.D. -3.2 -2.9 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -3.1 -2.7 -0.2
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant N.D. N.D. -2.6 -3.5 +0.1
phage FRSphage N.D. N.D. -3.2 -2.9 +0.1
phage FRSphage N.D. N.D. -3.4 -2.6 +0.1
carbon source L-Glutamine (C) N.D. N.D. -2.8 -3.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. N.D. -1.8 -3.7 -0.3
carbon source L-Lysine (C) N.D. N.D. -3.6 -2.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -3.0 -2.6 -0.2
no phage control no phage control N.D. N.D. -3.0 -2.9 +0.1
carbon source L-Glutamic (C) N.D. N.D. -3.5 -1.8 -0.5
phagefrs Time6-FRS N.D. N.D. -3.1 -2.6 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -2.4 -3.0 -0.1
lb outgrowth control more dilute start LB outgrowth control more dilute start N.D. N.D. -1.8 -3.7 +0.0
carbon source D-Lysine 10 mM (C) N.D. N.D. -1.7 -2.9 -0.8
no phage control no phage control N.D. N.D. -3.0 -2.7 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. -2.5 -2.9 +0.2
carbon source L-Glutamic (C) N.D. N.D. -2.9 -2.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -3.1 -1.9 +1.3
remove
PP_5335
plot		 remove
PP_5336
plot		 remove
PP_5337		 remove
PP_5338
plot		 remove
PP_5339
plot