Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5260 and PP_5261 are separated by 98 nucleotidesPP_5261 and PP_5262 are separated by 157 nucleotidesPP_5262 and PP_5263 are separated by 81 nucleotidesPP_5263 and PP_5264 are separated by 296 nucleotides PP_5260: PP_5260 - 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data), at 6,005,138 to 6,006,532 _5260 PP_5261: PP_5261 - Transcriptional regulator, LysR family, at 6,006,631 to 6,007,557 _5261 PP_5262: PP_5262 - Probable multidrug resistance protein NorM, at 6,007,715 to 6,009,103 _5262 PP_5263: PP_5263 - GGDEF domain protein, at 6,009,185 to 6,010,852 _5263 PP_5264: PP_5264 - helicase a single-stranded DNA dependent ATPase, at 6,011,149 to 6,013,158 _5264
Group Condition PP_5260 PP_5261 PP_5262 PP_5263 PP_5264
carbon source L-Lysine (C) -7.4 -0.2 +0.1 -0.2 N.D.
carbon source L-Lysine 10 mM (C) -6.1 -0.1 -0.3 -0.2 N.D.
nitrogen source Propandiamine (N) -0.9 -0.7 -5.0 +0.5 N.D.
carbon source L-Lysine (C) -6.1 +0.1 -0.0 -0.0 N.D.
nitrogen source Propandiamine (N) -0.5 -0.7 -3.8 +0.1 N.D.
carbon source L-Lysine (C) -5.2 +0.2 -0.1 +0.3 N.D.
carbon source D-Lysine 10 mM (C) -3.6 -0.1 -0.1 -0.1 N.D.
nitrogen source L-Pipecolic Acid (N) -3.7 +0.1 +0.2 -0.0 N.D.
carbon source D-Lysine 10 mM (C) -2.4 -0.3 -0.2 -0.3 N.D.
nitrogen source D-Lysine (N) -3.1 +0.0 +0.1 +0.1 N.D.
nitrogen source L-Pipecolic Acid (N) -2.8 +0.0 +0.1 +0.1 N.D.
phage P. putida PUT 7 MOI 1 -1.3 -0.3 -0.6 -0.4 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.5 -0.1 -0.2 -0.6 N.D.
nitrogen source D-Lysine (N) -2.2 -0.1 -0.1 +0.0 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.8 -0.1 -0.4 -0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.1 -0.3 -0.9 N.D.
phage P. putida Sci small MOI 0.1 -0.4 -0.1 -0.2 -0.8 N.D.
nitrogen source L-Lysine (N) -1.3 +0.1 -0.1 -0.0 N.D.
pH Growth at pH6 and (C) D-Glucose -0.4 -0.4 -0.0 -0.7 N.D.
phage P. putida South MOI 10 -0.5 -0.4 +0.0 -0.5 N.D.
temperature Growth at 30C -0.7 -0.3 +0.2 -0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 +0.3 -0.3 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 +0.4 +0.1 -0.6 N.D.
pH pH 7 -0.1 -1.0 -0.0 +0.4 N.D.
nitrogen source NAG (N); with MOPS +0.2 -0.1 +0.3 -1.1 N.D.
carbon source carbon source 3-O-methyl-glucose 10 mM -0.2 -0.6 -0.3 +0.5 N.D.
pH pH 8 -0.4 -0.4 -0.1 +0.6 N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.1 -0.6 -0.3 +0.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +0.4 -0.0 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 +0.2 +1.0 N.D.
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