Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5257 and PP_5258 are separated by 145 nucleotidesPP_5258 and PP_5259 are separated by 135 nucleotidesPP_5259 and PP_5260 are separated by 175 nucleotidesPP_5260 and PP_5261 are separated by 98 nucleotides PP_5257: PP_5257 - L-pipecolate oxidase, at 6,001,002 to 6,002,300 _5257 PP_5258: PP_5258 - L-piperidine-6-carboxylate dehydrogenase, at 6,002,446 to 6,003,936 _5258 PP_5259: PP_5259 - Transcriptional regulator, LysR family, at 6,004,072 to 6,004,962 _5259 PP_5260: PP_5260 - 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data), at 6,005,138 to 6,006,532 _5260 PP_5261: PP_5261 - Transcriptional regulator, LysR family, at 6,006,631 to 6,007,557 _5261
Group Condition PP_5257 PP_5258 PP_5259 PP_5260 PP_5261
carbon source L-Lysine (C) -7.4 -5.7 -0.1 -7.4 -0.2
carbon source L-Lysine (C) -6.0 -5.1 -0.1 -6.1 +0.1
carbon source L-Lysine (C) -4.6 -5.5 +0.1 -5.2 +0.2
carbon source L-Lysine 10 mM (C) -4.0 -4.6 -0.1 -6.1 -0.1
carbon source D-Lysine 10 mM (C) -4.7 -4.5 -0.5 -2.4 -0.3
carbon source D-Lysine 10 mM (C) -3.1 -4.2 -0.4 -3.6 -0.1
nitrogen source L-Pipecolic Acid (N) -2.6 -2.4 -0.2 -3.7 +0.1
nitrogen source L-Pipecolic Acid (N) -2.4 -3.0 -0.4 -2.8 +0.0
nitrogen source D-Lysine (N) -2.6 -2.6 -0.1 -3.1 +0.0
nitrogen source D-Lysine (N) -2.8 -2.0 -0.2 -2.2 -0.1
micoeukaryotes C.elegans, mixed culture-1 -1.7 -1.5 -0.2 -0.8 -0.1
micoeukaryotes C.elegans, mixed culture-2 -1.2 -1.4 -0.0 -0.5 -0.2
nitrogen source L-Lysine (N) -1.0 -0.9 -0.0 -1.3 +0.1
carbon source Cholinium lysinate (C) -1.0 -1.2 +0.0 -0.9 -0.0
nitrogen source L-Lysine (N) -0.9 -0.9 -0.1 -1.1 -0.0
phage P. putida Sci small MOI 0.1 +0.1 -2.2 -0.3 -0.4 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.3 -1.0 -0.0 -0.1 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.1 -0.7 -0.1 -0.5 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 -1.0 -0.5 -0.0 -0.6 -0.3
phage P. putida PUT 7 MOI 1 -0.2 -0.3 -0.2 -1.3 -0.3
phage P. putida Sci small MOI 0.1 -0.6 -0.5 -0.4 +0.0 -0.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 +0.0 +0.1 -1.5 -0.1
pH pH 7 +0.4 -0.6 -0.1 -0.1 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -0.6 -0.0 -0.6 +0.4
nitrogen source Propandiamine (N) +1.0 -1.3 +0.9 -0.9 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -0.9 -0.2 +0.2 +0.3
nitrogen source Propandiamine (N) +0.8 -1.0 +0.4 -0.5 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.8 -0.1 +0.3 +0.4
carbon source Valerolactone (C) +0.4 +0.4 +0.2 -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.4 +0.3 -0.5 +0.4
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