Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5251	PP_5252	PP_5253	PP_5254	PP_5255
temperature	Growth at 25C	-0.1	-0.1	-6.3	+0.6	+0.6
carbon source	ferulate (C); with MOPS	-0.3	-0.2	-2.1	-0.3	-0.3
nitrogen source	nitrate (N)	-0.1	-0.2	-2.6	-0.6	+0.5
pH	Growth at pH8 and (C) D-Glucose	+0.1	-0.0	-2.8	+0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.1	-2.6	+0.1	-0.0
temperature shift	Temperature shift 10_to_30; with MOPS	-0.3	-0.1	-1.9	+0.3	-0.1
carbon source	Tween 20 (C)	-0.1	-0.3	-1.9	+0.1	+0.1
nitrogen source	NAG (N); with MOPS	-0.7	+0.3	-1.3	-0.1	+0.1
phage	P. putida Sci small MOI 0.1	-0.3	-0.2	+0.2	-0.9	-0.7
carbon source	L-Lysine 10 mM (C)	+0.1	+0.1	-1.7	+0.1	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	+0.2	+0.2	-0.2	-1.8
nitrogen source	2,6-diaminopimelic (N)	-0.6	-0.5	+0.1	+0.7	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.0	-0.3	-2.1	+0.4	+1.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	-0.1	-1.5	+0.3	+0.4
stress	Growth with Chloride 500 mM; with MOPS	+0.1	+0.2	-1.5	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	-0.9	+0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.1	-1.0	+0.3	+0.7
temperature shift	Temperature shift 30_to_10; with MOPS	-0.1	-0.0	+0.7	-0.8	+0.5
carbon source	butyrate (C)	+0.0	+0.3	-1.2	+0.5	+0.7
pH	Growth at pH6 and (C) D-Glucose	-0.5	-0.1	+0.2	-0.4	+1.2
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3	+0.2	-0.6	+0.7	+0.6
nitrogen source	Propiolactam (N)	+0.1	+0.2	+1.4	+0.2	-0.9
nitrogen source	NAG (N); with MOPS	+0.4	+0.3	+0.2	-1.1	+1.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.1	+1.3	+0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+1.2	-0.3	+0.5
pH	Valerolactone (C) pH 6.5	-0.4	+0.2	+1.0	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	-0.4	+0.5	+0.5
nitrogen source	nitrate (N)	-0.2	-0.1	+1.3	+0.4	+0.4
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.0	+0.4	+1.4	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	+2.3	-0.3	+0.5