Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_5249	PP_5250	PP_5251	PP_5252	PP_5253
temperature	Growth at 25C	-0.2	+0.2	-0.1	-0.1	-6.3
pH	Growth at pH8 and (C) D-Glucose	-0.5	+0.3	+0.1	-0.0	-2.8
nitrogen source	nitrate (N)	-0.1	+0.1	-0.1	-0.2	-2.6
carbon source	ferulate (C); with MOPS	-0.2	-0.0	-0.3	-0.2	-2.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	+0.5	-0.0	-0.3	-2.1
carbon source	Tween 20 (C)	+0.1	-0.3	-0.1	-0.3	-1.9
temperature shift	Temperature shift 10_to_30; with MOPS	+0.2	-0.1	-0.3	-0.1	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.2	+0.4	+0.1	-2.6
temperature	Growth at 25C	+0.2	+0.1	-0.5	-0.2	-1.1
carbon source	L-Lysine 10 mM (C)	+0.1	-0.1	+0.1	+0.1	-1.7
nitrogen source	NAG (N); with MOPS	+0.1	+0.3	-0.7	+0.3	-1.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	+0.1	+0.1	-0.1	-1.5
stress	Growth with Chloride 500 mM; with MOPS	-0.1	+0.2	+0.1	+0.2	-1.5
temperature shift	Temperature shift 30_to_25	-0.5	-0.1	-0.3	-0.5	+0.3
phage	P. putida Sci Big MOI 0.1	-0.6	+0.1	+0.3	+0.0	-1.0
stress	R2A with Fusaric 480 ug/mL	+0.2	-0.0	+0.2	-0.0	-1.3
carbon source	Valeric (C)	+0.3	-0.3	+0.2	-0.1	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4	+0.2	-0.2	+0.1	-1.2
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.0	-0.9	+0.2	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.0	-0.5	-0.1	+1.3
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.3	+0.5	-0.3	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	+0.1	-0.5	+0.2	+0.1
nitrogen source	nitrate (N)	+0.3	-0.2	-0.2	-0.1	+1.3
temperature shift	Temperature shift 10_to_30; with MOPS	+0.3	+0.3	-0.3	+0.2	+0.8
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.6	+0.1	+0.0	+0.4	+1.4
pH	Valerolactone (C) pH 6.5	+0.3	+0.3	-0.4	+0.2	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.2	-0.1	+0.1	+1.2
nitrogen source	Propiolactam (N)	+0.0	-0.1	+0.1	+0.2	+1.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.1	+0.3	+0.2	+0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	+0.2	+0.4	+2.3