Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5244	PP_5245	PP_5246	PP_5247	PP_5248
stress	Growth with Chloride 500 mM; with MOPS	-0.1	-0.1	-0.2	+0.1	-3.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.2	-0.3	+0.3	-0.4	-3.5
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.4	-0.2	-0.5	-0.1	-2.3
carbon source	1,3-Butandiol (C)	-0.8	+0.2	+0.0	+0.5	-3.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.1	-0.1	-0.0	-1.7	-1.8
pH	Growth at pH6 and (C) Trisodium citrate	+0.0	-0.1	-0.0	+0.3	-3.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-0.2	-0.2	-0.4	-2.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	-0.1	+0.3	+0.5	-3.4
temperature	Growth at 30C; with MOPS	-1.0	-0.1	+0.1	-0.5	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.1	+0.1	-0.5	-2.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.7	-0.2	+0.1	-0.2	-1.8
carbon source	1,4-Butanediol (C)	-0.5	-0.0	+0.0	-0.1	-2.2
no stress control	Growth with no stress	-0.1	-0.0	+0.2	+0.7	-3.5
carbon source	carbon source D-Glucose 55.5 mM	+0.1	-0.2	-0.4	-0.2	-2.1
pH	pH 4	-0.3	-0.1	-0.1	+0.1	-2.1
no phage control	Time6-nophage	-0.0	+0.3	-0.0	-1.2	-1.6
carbon source	ferulate (C); with MOPS	-0.2	+0.0	+0.3	-0.5	-2.0
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.4	+0.1	-0.4	-0.4	-2.1
pH	Growth at pH6 and (C) D-Glucose	+0.3	-0.1	+0.0	+0.1	-2.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.3	-0.1	-0.2	-2.1
pH	Growth at pH6 and (C) Trisodium citrate	-1.1	-0.3	+0.0	+0.3	-0.9
carbon source	Sebacic (C)	+0.5	+0.1	-0.3	+0.1	-2.1
nitrogen source	nitrate (N)	+0.3	-0.0	+0.3	+0.4	-2.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.0	+0.2	-1.8
phage	P. putida PUT 7 MOI 1	-0.6	-0.4	-0.8	+0.2	+0.8
nitrogen source	NAG (N); with MOPS	+0.1	-0.4	+0.6	-1.6	+1.5
pH	Valerolactone (C) pH 6.5	-0.1	-0.1	+0.0	-0.5	+1.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.2	-0.5	+1.5	-0.2
nitrogen source	nitrogen source nitrate 20mM	-0.2	+0.2	+0.3	+0.5	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.2	-0.1	+0.9	+4.7