Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5726 and PP_5727 are separated by 1092 nucleotidesPP_5727 and PP_5239 are separated by 1143 nucleotidesPP_5239 and PP_5240 are separated by 68 nucleotidesPP_5240 and PP_5241 overlap by 4 nucleotides PP_5726: PP_5726 - conserved protein of unknown function, at 5,972,993 to 5,973,688 _5726 PP_5727: PP_5727 - protein of unknown function, at 5,974,781 to 5,975,056 _5727 PP_5239: PP_5239 - putative ATP-dependent chelatase, at 5,976,200 to 5,977,690 _5239 PP_5240: PP_5240 - Response regulator, at 5,977,759 to 5,978,127 _5240 PP_5241: PP_5241 - DNA-binding response regulator, LuxR family, at 5,978,124 to 5,979,116 _5241
Group Condition PP_5726 PP_5727 PP_5239 PP_5240 PP_5241
carbon source Tween 20 (C) +0.2 +0.1 -0.1 -6.2 -2.6
temperature Growth at 25C +0.2 -0.2 -0.2 -3.9 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 +0.5 -0.3 +0.4 -3.7
carbon source D-Glucose (C) -0.2 -0.1 +0.1 -2.8 +0.2
nitrogen source nitrogen source nitrite 1mM +0.2 +0.2 +0.1 -1.8 -1.4
nitrogen source D-2-Aminobutyric (N) +0.2 -0.2 +0.5 +0.2 -3.1
pH D-Glucose (C) pH 6 +0.1 +0.2 -0.0 -0.8 -1.6
pH Growth at pH9 and (C) Trisodium citrate +0.3 -1.1 -0.0 -0.5 -0.8
nitrogen source nitrate (N) +0.4 -0.3 -0.4 +0.0 -1.5
nitrogen source Urea (N) -0.4 -0.7 -0.4 +0.4 -0.8
pH Growth at pH6 and (C) Trisodium citrate +0.5 -0.4 -0.2 -1.6 -0.1
pH Valerolactone (C) pH 6.5 -0.9 -0.2 +0.1 -1.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.0 -0.6 +0.1 +0.7 -1.6
carbon source 2-Methylbutanoic (C) +0.2 +0.1 -0.5 -1.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 +0.3 -0.2 -1.4 +1.0
carbon source L-Lysine (C) -0.3 +0.4 -0.0 -1.3 +0.7
pH Growth at pH7 and (C) D-Glucose +0.2 -0.7 -0.1 -1.5 +1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 -0.4 -0.2 -0.9 +0.8
carbon source acetate (C) +0.5 -0.3 +0.1 -2.0 +1.4
nitrogen source NAG (N); with MOPS -0.6 +0.0 +0.3 +1.5 -1.4
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.0 +0.8 +0.3 +0.6 -1.7
carbon source D-Glucose (C); with MOPS +0.2 +0.2 -0.4 -0.9 +1.0
pH pH 7 +0.3 +0.0 +0.1 +1.3 -1.4
phage P. putida Missley MOI 0.1 +0.4 +0.2 +0.2 +0.9 -1.3
pH pH 6 +0.5 -0.4 +0.1 +1.6 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +0.4 -0.3 +0.8 -1.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +1.1 +0.1 +0.6 -0.8
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.3 -0.1 -0.0 +1.5 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 +0.2 +0.3 +1.3 +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.7 +0.8 +1.1 +1.2
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