Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5231 and PP_5232 are separated by 99 nucleotidesPP_5232 and PP_5233 are separated by 429 nucleotidesPP_5233 and PP_5234 are separated by 46 nucleotidesPP_5234 and PP_5723 are separated by 134 nucleotides PP_5231: PP_5231 - putative (S)-2-haloacid dehalogenase, at 5,964,807 to 5,965,502 _5231 PP_5232: PP_5232 - conserved protein of unknown function, at 5,965,602 to 5,965,931 _5232 PP_5233: PP_5233 - ammonium transporter AmtB, at 5,966,361 to 5,967,692 _5233 PP_5234: PP_5234 - activator of NRII(GlnL/NtrB) phosphatase, at 5,967,739 to 5,968,077 _5234 PP_5723: PP_5723 - protein of unknown function, at 5,968,212 to 5,968,571 _5723
Group Condition PP_5231 PP_5232 PP_5233 PP_5234 PP_5723
carbon source ferulate (C); with MOPS -0.5 -3.8 -0.4 N.D. -0.3
nitrogen source 2,6-diaminopimelic (N) +0.2 -2.8 -1.9 N.D. +0.5
stress Growth with Chloride 500 mM; with MOPS -0.2 -3.4 +0.1 N.D. -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -4.4 +0.3 N.D. +0.1
stress Growth with Chloride 500 mM -0.0 -3.6 +0.0 N.D. -0.1
nitrogen source D-2-Aminobutyric (N) -0.4 -0.5 -1.4 N.D. -1.4
micoeukaryotes C.elegans, mixed culture-2 -0.4 -2.5 -0.3 N.D. -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 -3.3 -0.1 N.D. +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -1.6 -0.9 N.D. -0.8
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB +0.2 -2.4 -0.7 N.D. -0.3
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB +0.1 -1.9 -0.7 N.D. -0.7
nitrogen source nitrogen source nitrate 20mM -0.2 -1.1 -1.4 N.D. -0.4
nitrogen source 1,6-Hexanediamine (N) +0.1 -0.3 -2.2 N.D. -0.7
carbon source Delta-Decalactone (C) -0.0 -2.8 -0.3 N.D. +0.3
nitrogen source D-2-Aminobutyric (N) +0.3 +0.3 -2.3 N.D. -0.9
nitrogen source DL-2-Aminobutyric (N) -0.4 +0.3 -2.2 N.D. -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -2.8 +0.0 N.D. +0.7
nitrogen source Hippuric (N) +0.4 +0.5 -2.6 N.D. -0.2
nitrogen source Hippuric (N) +0.1 +0.7 -2.3 N.D. -0.4
nitrogen source Hydantoin (N) +0.4 -1.5 -0.9 N.D. +0.5
nitrogen source L-Threonine (N) +0.2 +0.8 -1.5 N.D. -0.5
nitrogen source L-Threonine (N) -0.2 +1.1 -1.4 N.D. -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.7 -1.8 +0.3 N.D. +0.6
carbon source L-Glutamine (C) -0.3 +2.6 +0.3 N.D. +0.1
nitrogen source L-Methionine (N) +0.2 +4.0 -1.9 N.D. +0.5
nitrogen source L-Methionine (N) +0.2 +4.1 -1.8 N.D. +0.5
carbon source L-Glutamic (C) -0.3 +2.9 +0.1 N.D. +0.4
carbon source 4-Hydroxyvalerate (C) (40mM) -0.1 +3.4 +0.0 N.D. +0.1
carbon source 4-Hydroxyvalerate (C) (40mM) +0.1 +3.6 +0.1 N.D. +0.0
carbon source L-Alanine (C) -0.2 +3.6 +0.3 N.D. +0.2
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