Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5229	PP_5230	PP_5231	PP_5232	PP_5233
nitrogen source	2,6-diaminopimelic (N)	-1.6	-0.4	+0.2	-2.8	-1.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6	-2.7	+0.1	-4.4	+0.3
carbon source	ferulate (C); with MOPS	-0.6	-0.8	-0.5	-3.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.3	-3.6	-0.2	-0.1	-0.3
stress	Growth with Chloride 500 mM	-0.5	-1.2	-0.0	-3.6	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	-2.5	-0.2	-2.3	+0.0
carbon source	DL-3-Hydroxyisobutyric (C)	-0.8	-2.1	+0.3	-2.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.6	-1.2	-0.1	-2.8	+0.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.7	-2.7	-1.2	+0.7	+0.2
carbon source	ferulate (C); with MOPS	-0.2	-2.6	-0.9	-1.3	+0.4
nitrogen source	Hippuric (N)	-0.5	-2.4	+0.4	+0.5	-2.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7	-1.1	-0.3	-2.6	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-1.7	+0.1	-1.6	-0.9
micoeukaryotes	C.elegans, mixed culture-2	+0.4	-1.4	-0.4	-2.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-2.1	-0.3	-1.5	+0.5
nitrogen source	DL-2-Aminobutyric (N)	+0.1	-1.2	-0.4	+0.3	-2.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	-3.2	+0.1	-0.6	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-3.0	+0.3	-0.9	+1.1
nitrogen source	Propiolactam (N)	+0.8	-1.2	+0.0	+0.5	-2.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4	-1.3	+0.7	-1.8	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.1	-2.9	-0.2	+0.8	+0.5
nitrogen source	L-Leucine (N)	-0.6	-1.7	+0.0	+1.8	-0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.5	-2.4	+0.2	+1.7	-0.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-1.2	-1.2	+0.4	+2.1	-0.1
nitrogen source	L-Methionine (N)	+0.3	-1.0	+0.2	+4.0	-1.9
nitrogen source	L-Methionine (N)	+0.2	-0.9	+0.2	+4.1	-1.8
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.9	-0.5	-0.1	+3.4	+0.0
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.0	-0.7	+0.1	+3.6	+0.1
carbon source	L-Alanine (C)	-0.3	-0.1	-0.2	+3.6	+0.3
carbon source	carbon source 4-vinylphenol 0.1 mM	+1.5	+1.2	+0.5	+1.2	-0.3